MUSB0414, MUSB0414 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0414
Genbank IDDX822734
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822734
Source TypeEST
Repeat Motif(AT)6
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0414_F: CGAAAATGAACAGAAACGAACG
Primer 2MUSB0414_R: GAGAAATTGAGGGGCTAAAATG
Product Length310
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0414
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822734
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A07chromosomeA07:14253953..14254261 +
A07chromosomeA07:14357959..14358273 +
CM018208.1chromosomeCM018208.1:14204089..14204397 +
CM018208.1chromosomeCM018208.1:14316447..14316764 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:22523939..22524246 +
scaffold913.1supercontigscaffold913.1:541686..541994 -
A07chromosomeA07:13501188..13501496 +
A07chromosomeA07:13604038..13604352 +
Ghir_A07chromosomeGhir_A07:14516332..14516640 +
Ghir_A07chromosomeGhir_A07:14620279..14620593 +
A07chromosomeA07:13909744..13910052 +
A07chromosomeA07:14013769..14014083 +
A07chromosomeA07:14509263..14509571 +
A07chromosomeA07:14613259..14613573 +
A07chromosomeA07:14461289..14461597 +
A07chromosomeA07:14565314..14565628 +
At07chromosomeAt07:14589136..14589444 +
At07chromosomeAt07:14707055..14707372 +
scaffold9913supercontigscaffold9913:41340..41648 +
scaffold1552supercontigscaffold1552:111695..112012 +
Scaffold5supercontigScaffold5:290625..290942 +
Gbar_A07chromosomeGbar_A07:14337142..14337450 +
A07chromosomeA07:14287191..14287499 +
A07chromosomeA07:14410620..14410937 +
CM017616.1chromosomeCM017616.1:14186955..14187261 +
CM017642.1chromosomeCM017642.1:14181409..14181717 +
CM017642.1chromosomeCM017642.1:14280850..14281167 +
CM017694.1chromosomeCM017694.1:14432212..14432520 +
CM017694.1chromosomeCM017694.1:14548943..14549260 +
A07chromosomeA07:14659941..14660249 +
A07chromosomeA07:14763952..14764266 +
Chr07chromosomeChr07:15168617..15168925 +
Chr06chromosomeChr06:33663308..33663618 +
Chr07chromosomeChr07:15426484..15426791 +
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822734DX822734Gossypium hirsutumsequence_feature


Sequence
>MUSB0414 ID=MUSB0414; Name=MUSB0414; organism=Gossypium hirsutum; type=genetic_marker; length=310bp
CGAAAATGAACAGAAACGAACGATTATTCAACACTTTCGACTTTCCCCGA
TCTAATTCTATTTTTTTGGTTCTTGATCTATATAAATTCAAAATTGACTT
ATTCAATCTCACATTCATTCAAATCAATCCATATATATATATTTAGGACA
TTTTACAAATTAGCCCTCACATTTTAACACTTTAGTTCTTAATTCATAAA
ATCAAAAAATACACATAAATTTATTTTCACATATGTCTAACCGAATTTTC
CTTTTACTCATATAAGCCCACATATTTCATTTATTCTACATTTTAGCCCC
TCAATTTCTC