MUSB0349, MUSB0349 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0349
Genbank IDDX822676
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822676
Source TypeEST
Repeat Motif(TAT)4
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0349_F: TCACCATTGCTCAACTTCCT
Primer 2MUSB0349_R: TCCCAGTGACTTGATTTGACTT
Product Length599
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0349
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822676
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:13497070..13497669 +
D02chromosomeD02:13521549..13522150 +
CM018216.1chromosomeCM018216.1:12351702..12352301 +
CM018216.1chromosomeCM018216.1:12376537..12377138 +
D10_03chromosomeD10_03:53056390..53056989 -
CM016616.1chromosomeCM016616.1:133159865..133160462 -
Dt_chr5chromosomeDt_chr5:48778533..48779132 +
Dt_chr5chromosomeDt_chr5:48803106..48803707 +
D02chromosomeD02:13128098..13128697 +
D02chromosomeD02:13149166..13149767 +
Ghir_D02chromosomeGhir_D02:12961283..12961882 +
Ghir_D02chromosomeGhir_D02:12985755..12986355 +
D02chromosomeD02:12484207..12484806 +
D02chromosomeD02:12865915..12866514 +
D02chromosomeD02:12890390..12890991 +
D02chromosomeD02:12943008..12943607 +
D02chromosomeD02:12967493..12968094 +
scaffold5692supercontigscaffold5692:860250..860849 -
Gbar_D02chromosomeGbar_D02:12837142..12837741 +
Gbar_D02chromosomeGbar_D02:12861977..12862578 +
D02chromosomeD02:12311818..12312417 +
D02chromosomeD02:12336842..12337443 +
CM017624.1chromosomeCM017624.1:12869922..12870521 +
CM017624.1chromosomeCM017624.1:12894470..12895071 +
CM017650.1chromosomeCM017650.1:13430517..13431116 +
CM017650.1chromosomeCM017650.1:13455690..13456290 +
CM017702.1chromosomeCM017702.1:12687666..12688265 +
CM017702.1chromosomeCM017702.1:12712591..12713192 +
D02chromosomeD02:13273820..13274419 +
D02chromosomeD02:13298297..13298898 +
Chr_05chromosomeChr_05:9147015..9147614 +
Chr05chromosomeChr05:9261681..9262267 +
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822676DX822676Gossypium hirsutumsequence_feature


Sequence
>MUSB0349 ID=MUSB0349; Name=MUSB0349; organism=Gossypium hirsutum; type=genetic_marker; length=599bp
TCACCATTGCTCAACTTCCTAGAAAAATAAGCATATGAAAAATGTCTATT
ATTATTATCGAAAGGAAAATCAAGATTCATTTCGATAAATATAGATCCCT
TTTCAACTAAAATGTTCTTTATTTTGTTGTCAAGATTAGCCTAATTTCTA
GGATCATAAATATCCAAAGAAGGAATTGTTTTTTCTTCATCAATGCCAAT
ATCATGATGAATTGTTTGTTCTTCATTAAAACCAATATTTTCAATATTGG
ATACATTTGACACATCATTAAGCTCATTTGGATAAATAATTTCATCATTC
TCATTGACATCATTATGCAAACTTTCATTTGATTGATCCAAAATTTCAAT
AGAAAATACTTTTTTTAAAATAAATTTATTAATAGCACCATGTTGTGATT
TTTTTAACTCTTCAACATGTTTTCTCTTTTTCCTTTTTTCACTTCCAGAT
AAATGCTTTTTAGGTAACATTGTATATAAAAGATAAACCAAATACTGAAG
TAACAAAAGAAAATAAAACTATTACACCTGATAAAAATTCCAAGTTGAGT
ATTTGTTTTTACATTTGCTAATTTCAAAAGTCAAATCAAGTCACTGGGA