MUSB0342, MUSB0342 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0342
Genbank IDDX822669
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822669
Source TypeEST
Repeat Motif(AT)7
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0342_F: CGCATGACCGTTTTCATGT
Primer 2MUSB0342_R: CGCCATCGGTGATGAATTT
Product Length546
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0342
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822669
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:67760906..67761451 -
D11chromosomeD11:61567944..61568489 -
Ghir_D11chromosomeGhir_D11:67360214..67360757 -
D11chromosomeD11:66250545..66251090 -
D11chromosomeD11:63874802..63875347 +
D11chromosomeD11:67254009..67254554 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822669DX822669Gossypium hirsutumsequence_feature


Sequence
>MUSB0342 ID=MUSB0342; Name=MUSB0342; organism=Gossypium hirsutum; type=genetic_marker; length=546bp
CGCATGACCGTTTTCATGTATTTTATGTTAACATGATAGTATTTATCTTA
TATATTAAGTCAAAAAATAATTTAAAAATTATAAAAAAAGAAAAAAAATT
CAAAATAAAAATGCATGAAGTATACATATATTATCACGCAAGTTGTCATA
TTTAAAATTTAAATTTTTTTAAAAAATTAATGGTAAAAATTATTTTTTTA
AGTTAATACTAAAATTTGATTATTTTTAAAAAAAATTAAAAACTAAATTT
AATTAAAAAATAAAACCTAATTTAGCAAAAAAATCAAATGAATTTTAAAT
TAAATTATCCTTAAAAAAAATCTAACTCTTTTAACTTATCATTATTTTCA
GATAAATATTATTATTTTAAGATTTCTTTTTGTCCAAGATTAGATGAATA
TATATATATATTTATATAAACACATATTTACAACTTTTTATTTTCTCTAC
CTTTACTTTCCTCTCTGTTCTACTGGTTTCTGGACTGTCTGATTAATCTT
TCGATTAAATTCTCCATTTCTTTTTTGAAATTCATCACCGATGGCG