MUSB0321, MUSB0321 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0321
Genbank IDDX822647
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822647
Source TypeEST
Repeat Motif(TTTA)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0321_F: TGACTCAAGTAGACAGCTTTGAATG
Primer 2MUSB0321_R: TACCTTGATACCTGTTGGAAACC
Product Length204
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0321
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822647
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold10867supercontigscaffold10867:1098..1300 -
At04chromosomeAt04:670039..670201 -
At02chromosomeAt02:71407557..71407773 -
scaffold6067supercontigscaffold6067:99888..100050 -
scaffold5375supercontigscaffold5375:109507..109723 -
scaffold18792supercontigscaffold18792:2325..2520 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822647DX822647Gossypium hirsutumsequence_feature


Sequence
>MUSB0321 ID=MUSB0321; Name=MUSB0321; organism=Gossypium hirsutum; type=genetic_marker; length=204bp
TGACTCAAGTAGACAGCTTTGAATGAACTATAAATAATAATTGAATTATA
GAGAATGTTGCATAATGAAACTTAAATGGATTAAATTGATAAATTAATTT
TATTTATTTAGATTCCGGAAAAGTCTAATACCAAGCTAGTTCGAATAAAG
GAAAAAGTTTGGGAATAAGTAAATTTTTATTGGTTTCCAACAGGTATCAA
GGTA