MUSB0318, MUSB0318 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0318
Genbank IDDX822644
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX822644
Source TypeEST
Repeat Motif(TCT)4
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0318_F: ACCTAAGATGGCCGATTGC
Primer 2MUSB0318_R: GGGTTGCATGTCAAATACCC
Product Length291
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0318
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX822644
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A07chromosomeA07:54109844..54110135 +
At_chr11chromosomeAt_chr11:37838553..37838845 -
scaffold1714_A07supercontigscaffold1714_A07:146785..147077 +
Scaffold2398supercontigScaffold2398:43128..43420 -
A07chromosomeA07:65239362..65239654 +
A07chromosomeA07:66188702..66188994 +
A07chromosomeA07:64242425..64242717 +
D11chromosomeD11:36332707..36333070 +
A07chromosomeA07:67176365..67176657 +
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX822644DX822644Gossypium hirsutumsequence_feature


Sequence
>MUSB0318 ID=MUSB0318; Name=MUSB0318; organism=Gossypium hirsutum; type=genetic_marker; length=291bp
ACCTAAGATGGCCGATTGCTTCATCCTCTTCTTCTTCTTTTCAATTCGGC
CAAGAAGAACCAAAGAATGAACTCTTTTTTTTTCCTCATCTTTCTCTAGT
CACGGCAATGGAGGAGGGGGGGCATGGATGAGACAACTTTGTTTTCATCA
CCCCACTCTTTTCATTATTTTATTACTAACCTCTTATTTTATTCTTTCTA
ACATAACACACTAACACAACATGTTTAAAACATTTTCACCCCATAGCATG
GCCGGCCACTAGCTCTAATTTGGGTATTTGACATGCAACCC