MUSB0254, MUSB0254 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0254
Genbank IDDX542455
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX542455
Source TypeEST
Repeat Motif(CAGA)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0254_F: GCAACATTTTTACCTGTCATGC
Primer 2MUSB0254_R: AAGAAACAGCGTAAGCAATGG
Product Length423
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0254
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX542455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold37788supercontigscaffold37788:28287..28709 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX542455DX542455Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch10_At.10N/A96.3MUSB0254View
2Yumian-1 x T586, RIL (2015)AD_ch10_At.10N/A73MUSB0254View
3Yumian-1 x T586, RIL (2009)AD_ch10_At.10N/A96.3MUSB0254/250tView
Sequence
>MUSB0254 ID=MUSB0254; Name=MUSB0254; organism=Gossypium hirsutum; type=genetic_marker; length=423bp
GCAACATTTTTACCTGTCATGCAAAGAAAAAATTACAGTACATACATTCA
GATATCCTAATTCATGCTCGGTAATGAAATCAGACAGACAGATCACTCAT
ATAAGGGTCTAAGTAGGGCTTACCGACCATTCAGTAGGTCTACAATTGAC
TTGGGCACCCGTGCAACCTTAGACAACTTTTTAAAAAAAGGCACACAGCC
CAAATTGGTCTTGGTCGTATGATTCATTTTTAATGTAACCCATGCTAGCT
AAATATATAAATTTAAGGATCTTAAACATATAAATTTAAGCCCCTAATTA
TTTTTTTTACAATCTTGATGATTTTCCTAAGTCAGAATAGGGGAACCCAA
AATCATTCTGACCTCGTCTCACAAAATTTATTATATCTGATAATTTACAA
TTCCATTGCTTACGCTGTTTCTT