MUSB0099, MUSB0099 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0099
Genbank IDDX553826
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX553826.2
Source TypeEST
Repeat Motif(AC)5
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0099_F: AGCATGAACAAACCCTAGCC
Primer 2MUSB0099_R: GTGGCCAAGTAGTTGCTTCC
Product Length137
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0099
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX553826
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:15379298..15379434 +
CM018225.1chromosomeCM018225.1:14382449..14382583 +
CM018212.1chromosomeCM018212.1:16825498..16825715 +
D5_11chromosomeD5_11:51589607..51589793 -
KI_11chromosomeKI_11:11256148..11256365 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:106520896..106521113 -
D10_11chromosomeD10_11:13965966..13966151 +
D10_11chromosomeD10_11:13958502..13958665 +
CM016624.1chromosomeCM016624.1:22742796..22743013 +
Dt_chr7chromosomeDt_chr7:11861901..11862037 -
D11chromosomeD11:14791217..14791353 +
Ghir_D11chromosomeGhir_D11:14975921..14976057 +
D11chromosomeD11:14605115..14605251 +
D09chromosomeD09:37335899..37336035 +
D11chromosomeD11:14979424..14979560 +
D11chromosomeD11:14762558..14762694 +
scaffold17432supercontigscaffold17432:160690..160907 -
scaffold15460supercontigscaffold15460:174746..174880 -
Gbar_D11chromosomeGbar_D11:14681052..14681186 +
Gbar_A11chromosomeGbar_A11:16564004..16564221 +
D11chromosomeD11:14580097..14580233 +
A11chromosomeA11:16815512..16815729 +
CM017620.1chromosomeCM017620.1:17230223..17230440 +
CM017659.1chromosomeCM017659.1:14877306..14877492 +
CM017646.1chromosomeCM017646.1:17350506..17350723 +
CM017711.1chromosomeCM017711.1:14657987..14658121 +
CM017698.1chromosomeCM017698.1:17042351..17042568 +
D11chromosomeD11:15255394..15255530 +
Chr11chromosomeChr11:18284483..18284700 +
Chr11chromosomeChr11:17774025..17774242 +
Chr11chromosomeChr11:49511523..49511709 -
B_11chromosomeB_11:16559363..16559579 +
Chr07chromosomeChr07:14492620..14492806 +
chr07chromosomechr07:12071629..12071815 +
Chr_07chromosomeChr_07:12491391..12491577 +
Chr07chromosomeChr07:14467659..14467842 +
Chr07chromosomeChr07:11316496..11316682 +
Chr07chromosomeChr07:10063403..10063589 +
Chr07chromosomeChr07:11659629..11659815 +
F11chromosomeF11:15068901..15069136 +
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX553826.2DX553826.2Gossypium hirsutumsequence_feature


Sequence
>MUSB0099 ID=MUSB0099; Name=MUSB0099; organism=Gossypium hirsutum; type=genetic_marker; length=137bp
AGCATGAACAAACCCTAGCCTTAAGTTCAAAAAGTAACATTTATGAATAA
CATCGTTGCTTGAACCTGAAATCCTAGATCCAGACCCAAATTAGAAAACA
CACACACAAATGAAGCAGGAAGCAACTACTTGGCCAC