MUSB0063, MUSB0063 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMUSB0063
Genbank IDDX555547
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceDX555547
Source TypeEST
Repeat Motif(AAGA)3
PCR ConditionAnnealing temperature: 55
Primer 1MUSB0063_F: GGGGCTAATGTGTAAAAATACCG
Primer 2MUSB0063_R: CTTCCTCGAATTTGGAATGG
Product Length170
Restriction EnzymeHindIII; NotI
PolymorphismP_ MUSB0063
Publication[view all]
CommentPrimer data obtained in 2006
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDX555547
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A04chromosomeA04:47012973..47013142 -
A04chromosomeA04:46994399..46994568 -
A04chromosomeA04:47003684..47003852 -
CM018205.1chromosomeCM018205.1:49417814..49417983 -
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:35014479..35014648 -
At_chr7chromosomeAt_chr7:18725740..18725909 +
At_chr12chromosomeAt_chr12:14941310..14941479 -
scaffold74347supercontigscaffold74347:446..619 +
scaffold265591supercontigscaffold265591:42..211 +
Ghir_A04chromosomeGhir_A04:52230580..52230749 -
Ghir_A04chromosomeGhir_A04:52212048..52212217 -
Ghir_A04chromosomeGhir_A04:52221333..52221499 -
scaffold4972_obj_A04supercontigscaffold4972_obj_A04:1603..1772 -
A04chromosomeA04:54671904..54672073 -
A04chromosomeA04:52390055..52390224 -
A04chromosomeA04:52365802..52365970 -
A04chromosomeA04:52380771..52380938 -
A04chromosomeA04:48271875..48272044 -
A04chromosomeA04:48281164..48281333 -
A04chromosomeA04:48262585..48262754 -
At04chromosomeAt04:30785157..30785326 -
scaffold16960supercontigscaffold16960:16240..16409 -
Gbar_A04chromosomeGbar_A04:49591991..49592160 -
A04chromosomeA04:50336695..50336864 -
CM017613.1chromosomeCM017613.1:52108155..52108324 -
CM017639.1chromosomeCM017639.1:57657954..57658123 -
CM017691.1chromosomeCM017691.1:49866829..49866998 -
A04chromosomeA04:55248916..55249085 -
A04chromosomeA04:55258206..55258375 -
A04chromosomeA04:55239637..55239806 -
Chr04chromosomeChr04:75540155..75540324 -
Chr04chromosomeChr04:75924483..75924652 -
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DX555547DX555547Gossypium hirsutumsequence_feature


Sequence
>MUSB0063 ID=MUSB0063; Name=MUSB0063; organism=Gossypium hirsutum; type=genetic_marker; length=170bp
GGGGCTAATGTGTAAAAATACCGGAATGAGTATTTTTGGATTAATTTAAT
GAGTAGATGAATAAATAAGTTAATTTTGAATTCATATAGATCAAGAAAGA
AAGAATCCGGATTTGAAAAGCAAGGCTATCGAGTAGTAGATCCGATTCGT
CCATTCCAAATTCGAGGAAG