MUCS0529, MUCS0529 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUCS0529
AliasMUCS529
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifTCCT(2)CTC(3)
PCR ConditionAnnealing temperature: 55
Primer 1MUCS529_F: AAGCAGCAAAAACCCTAGTCC
Primer 2MUCS529_R: GTACTCGAGCAGGCTTGAcC
Product Length209
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:58709327..58709533 -
A08chromosomeA08:111793445..111793652 -
CM018222.1chromosomeCM018222.1:55220257..55220463 -
D5_08chromosomeD5_08:51540910..51541116 -
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:116022242..116022449 -
D10_08chromosomeD10_08:9563312..9563518 +
CM016621.1chromosomeCM016621.1:17516354..17516560 +
scaffold941.1supercontigscaffold941.1:2924..3131 +
scaffold3145.1supercontigscaffold3145.1:128156..128362 +
scaffold293.1supercontigscaffold293.1:249921..250127 +
D08chromosomeD08:55310366..55310572 -
A08chromosomeA08:92655414..92655621 -
Ghir_D08chromosomeGhir_D08:57916207..57916413 -
Ghir_A08chromosomeGhir_A08:110468363..110468570 -
D08chromosomeD08:58701613..58701819 -
A08chromosomeA08:113422133..113422340 -
D08chromosomeD08:57811303..57811509 -
A08chromosomeA08:113282624..113282831 -
D08chromosomeD08:55082840..55083046 -
A08chromosomeA08:109274781..109274988 -
scaffold1700supercontigscaffold1700:394082..394288 +
scaffold1700supercontigscaffold1700:391300..391506 +
Gbar_D08chromosomeGbar_D08:55266630..55266836 -
D08chromosomeD08:57210779..57210985 -
CM017630.1chromosomeCM017630.1:56720622..56720828 -
CM017617.1chromosomeCM017617.1:106869090..106869297 -
CM017656.1chromosomeCM017656.1:58903568..58903774 -
CM017643.1chromosomeCM017643.1:116337578..116337785 -
CM017708.1chromosomeCM017708.1:55646530..55646736 -
D08chromosomeD08:58501108..58501314 -
A08chromosomeA08:115139368..115139575 -
Chr08chromosomeChr08:118919934..118920141 -
Chr08chromosomeChr08:119912912..119913119 -
Chr08chromosomeChr08:52426385..52426591 -
B_08chromosomeB_08:90902244..90902450 -
Chr04chromosomeChr04:53951003..53951209 -
chr04chromosomechr04:40540308..40540514 -
Chr_04chromosomeChr_04:36952229..36952432 -
Chr04chromosomeChr04:35483437..35483643 -
Chr04chromosomeChr04:29851540..29851745 -
Chr04chromosomeChr04:36015945..36016151 -
F08chromosomeF08:93311182..93311388 -
Chr08chromosomeChr08:24133259..24133465 +
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch08_At.08N/A5.3MUCS529View
2(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch08_At.08N/A12.2MUCS529View
3Yumian-1 x 7235, RIL (2015)AD_ch08_At.08N/A78.7MUCS529View
4Yumian-1 x T586, RIL (2009)AD_ch08_At.08N/A1.7MUCS529/200tView
Sequence
>MUCS0529 ID=MUCS0529; Name=MUCS0529; organism=Gossypium arboreum; type=genetic_marker; length=209bp
AAGCAGCAAAAACCCTAGTCCTTATTCACATCCATTTACCTTCACTAACA
ATAAACTTGTACACTACTCAACGGTGACTTGATACACATCCTTCCTCTCC
TCCTCCTTCACTTTAGGCACAACCACTTTCAACACTCCATTTTTCATCTC
AGCCTTTATCTCATCCACCTTATACATGGTGGGGGGGTAGGTCAAGCCTG
CTCGAGTAC