MUCS0379, MUCS0379 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUCS0379
AliasMUCS379
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifTATTT(2)ATTT(2)
PCR ConditionAnnealing temperature: 55
Primer 1MUCS379_F: CAGGACTAGCCGATTGAACC
Primer 2MUCS379_R: AACAGACACCATTGTGATTCG
Product Length197
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:69748255..69748448 -
A11chromosomeA11:110808617..110808813 -
CM018212.1chromosomeCM018212.1:111471452..111471648 -
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:4363374..4363570 +
D10_11chromosomeD10_11:65531901..65532094 -
CM016624.1chromosomeCM016624.1:139993178..139993382 -
scaffold4438.1supercontigscaffold4438.1:53201..53394 +
At_chr8chromosomeAt_chr8:27336475..27336671 -
D11chromosomeD11:62664878..62665071 -
A11chromosomeA11:89775140..89775336 -
Ghir_D11chromosomeGhir_D11:69649684..69649876 -
Ghir_A11chromosomeGhir_A11:119701666..119701861 -
D11chromosomeD11:67929140..67929333 -
A11chromosomeA11:118007407..118007603 -
D11chromosomeD11:68979409..68979602 -
A11chromosomeA11:115898910..115899106 -
D11chromosomeD11:65532061..65532254 -
A11chromosomeA11:112569116..112569312 -
scaffold5044supercontigscaffold5044:8496..8692 +
Gbar_A11chromosomeGbar_A11:109796585..109796781 -
D11chromosomeD11:68659940..68660133 -
A11chromosomeA11:112972241..112972409 -
CM017633.1chromosomeCM017633.1:67666117..67666310 -
CM017620.1chromosomeCM017620.1:116876341..116876537 -
CM017659.1chromosomeCM017659.1:70167210..70167403 -
CM017646.1chromosomeCM017646.1:122949310..122949502 -
CM017698.1chromosomeCM017698.1:111627306..111627502 -
D11chromosomeD11:69239965..69240158 -
A11chromosomeA11:120618713..120618909 -
Chr11chromosomeChr11:128208363..128208559 -
Chr11chromosomeChr11:126945530..126945726 -
B_11chromosomeB_11:98230955..98231142 -
Chr07chromosomeChr07:66521374..66521568 -
chr07chromosomechr07:47435607..47435800 -
Chr07chromosomeChr07:68093272..68093465 -
Chr07chromosomeChr07:42616223..42616416 -
Chr07chromosomeChr07:35428382..35428562 -
Chr07chromosomeChr07:44656038..44656231 -
F11chromosomeF11:96345252..96345448 -
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch11_At.11N/A154.1MUCS379View
2JLZM x ZJXSLS, F2 (2008)A_JZ_A11N/A53.5MUCS379View
3IL138-A11-3 x TM-1, F2:3 (2014)AD_ch11_At.11N/A13.3MUCS379View
4AD-genome wide Reference Map (2009)AD_ch11_At.11N/A126mucs0379View
5TM-1 x Hai-7124, BC1 (2007)AD_ch11_At.11N/A17.2MUCS379-175View
6TM-1 x Hai-7124, BC1 (2008)AD_ch11_At.11N/A17.23MUCS379-175View
7TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A144.4MUCS379-175View
Sequence
>MUCS0379 ID=MUCS0379; Name=MUCS0379; organism=Gossypium arboreum; type=genetic_marker; length=197bp
CAGGACTAGCCGATTGAACCGAAAATCGTTCACTATATTGGTTCAGGCAT
AGTTTGGCCTTTGAGTGAATTGCTTGGAATAGGTAAAAACAGAGAAACCA
GGACAAAGCAGATGGTTGAATCGGTTTATAAAATTTTTAGTATATTTTAT
TTATTTATTTAATATTGTCAGACTCACGAATCACAATGGTGTCTGTT