MUCS0325, MUCS0325 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUCS0325
AliasMUCS325
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifTCA(4)TCG(2)
PCR ConditionAnnealing temperature: 55
Primer 1MUCS325_F: ACGAGCTTAAGAGCGTTTGG
Primer 2MUCS325_R: TGGTCTTGTTTGCAGTGGTG
Product Length268
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:33171367..33171627 +
A09chromosomeA09:58269510..58269770 +
CM018223.1chromosomeCM018223.1:31406306..31406566 +
CM018210.1chromosomeCM018210.1:54148484..54148743 +
D5_09chromosomeD5_09:26157087..26157347 +
KI_09chromosomeKI_09:24297445..24297706 -
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:60410408..60410668 +
D10_09chromosomeD10_09:17881323..17881796 -
Dt_chr6chromosomeDt_chr6:17717977..17718237 -
D09chromosomeD09:31496469..31496729 +
A09chromosomeA09:53257304..53257564 +
Ghir_D09chromosomeGhir_D09:33469758..33470018 +
Ghir_A09chromosomeGhir_A09:58113868..58114127 +
D09chromosomeD09:33350364..33350624 +
A09chromosomeA09:60340483..60340743 +
D09chromosomeD09:33085661..33085921 +
A09chromosomeA09:59807003..59807263 +
D09chromosomeD09:31334472..31334732 +
A09chromosomeA09:56746152..56746412 +
Dt09chromosomeDt09:34023228..34023488 +
At09chromosomeAt09:54148895..54149154 +
scaffold6408supercontigscaffold6408:77326..77586 +
scaffold358supercontigscaffold358:75045..75304 +
Gbar_D09chromosomeGbar_D09:31998475..31998735 +
Gbar_A09chromosomeGbar_A09:55006094..55006353 +
D09chromosomeD09:34765748..34766008 +
A09chromosomeA09:56173556..56173815 +
CM017631.1chromosomeCM017631.1:32315728..32315988 +
CM017618.1chromosomeCM017618.1:55631264..55631524 +
CM017657.1chromosomeCM017657.1:33505132..33505392 +
CM017644.1chromosomeCM017644.1:58559670..58559930 +
CM017709.1chromosomeCM017709.1:32954796..32955056 +
CM017696.1chromosomeCM017696.1:55933834..55934094 +
D09chromosomeD09:34641180..34641440 +
A09chromosomeA09:61143916..61144176 +
Chr09chromosomeChr09:59864559..59864819 +
Chr09chromosomeChr09:63060533..63060793 +
Chr09chromosomeChr09:31619551..31619811 +
Chr06chromosomeChr06:31960907..31961168 +
chr06chromosomechr06:25619250..25619511 +
Chr06chromosomeChr06:33348128..33348395 +
Chr06chromosomeChr06:23754197..23754458 +
Chr06chromosomeChr06:17618566..17618827 +
Chr06chromosomeChr06:21798066..21798329 +
E09chromosomeE09:26759771..26760036 -
F09chromosomeF09:49467616..49467874 +
Chr09chromosomeChr09:99393277..99393532 +
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(SM3 x SM12) x (X4133 x 8891), 4WC (2008)AD_ch23_Dt.09N/A12.7MUCS325View
2TM-1 x 3-79, RIL (2006)AD_ch09_At.09N/A27MUCS325View
3TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A96.74MUCS325View
4Yumian-1 x T586, F2:7 (2008)AD_ch09_At.09N/A0MUCS325View
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch23_Dt.09N/A43.1MUCS325View
6TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A45.4MUCS325View
7CCRI-35 x Yumian-1, RIL (2015)AD_ch23_Dt.09N/A87.8MUCS325View
8AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A89mucs0325View
9AD-genome wide Reference Map (2009)AD_ch09_At.09N/A105mucs0325View
10Yumian-1 x T586, RIL (2006)AD_ch15_Dt.01N/A42.5MUCS325aView
11Yumian-1 x T586, RIL (2006)AD_ch23_Dt.09N/A0MUCS325bView
12Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A22.1MUCS325bView
13Yumian-1 x T586, RIL (2009)AD_ch09_At.09N/A0MUCS325/280y(C9)View
14Yumian-1 x T586, RIL (2009)AD_ch15_Dt.01N/A42.5MUCS325/180y(C9)View
15CCRI-35 x Yumian-1, RIL (2017)AD_ch23_Dt.09N/A96.34MUCS325View
16TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A45.42MUCS325View
Sequence
>MUCS0325 ID=MUCS0325; Name=MUCS0325; organism=Gossypium arboreum; type=genetic_marker; length=268bp
ACGAGCTTAAGAGCGTTTGGTTTTGATTTTGTTGGAAGGTTGATTGAGGA
AAATAAAGATAAAAATAAAAATTTCCCTTTACATTGATTTTATGCTTCTT
CATCAACCTTCTCAACAGTCCCACAACTCTCAATTTTTCTTCTTAATTTT
TTTTCCCTAAAACGTTCCTACGTATATTACTTGTCCTGTTATTATTTTTG
GAGCTTAAAAATCTGATCATCATCATCATCGTCGAACCACCTCATGGCCA
CCACTGCAAACAAGACCA