MUCS0048, MUCS0048 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUCS0048
AliasMUCS048
MUCS0048=MUSS0371
MUSS0371
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifAGAAA(2)ATA(3)
PCR ConditionAnnealing temperature: 55
Primer 1MUCS048_F: GCTTTTCCTTGATGAAATCGG
Primer 2MUCS048_R: TTAATAATGGCAGCAGCATCC
Product Length261
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:73133417..73133677 -
A11chromosomeA11:114218621..114218876 -
CM018225.1chromosomeCM018225.1:69465109..69465369 -
CM018212.1chromosomeCM018212.1:114614861..114615115 -
D5_11chromosomeD5_11:112190..112443 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:159651..159910 +
D10_11chromosomeD10_11:67582646..67582899 -
scaffold3582.1supercontigscaffold3582.1:73818..74231 +
Dt_chr12chromosomeDt_chr12:5411758..5412018 -
D11chromosomeD11:66021398..66021658 -
A11chromosomeA11:93161712..93161967 -
Ghir_D11chromosomeGhir_D11:72777443..72777703 -
Ghir_A11chromosomeGhir_A11:123047710..123047964 -
D11chromosomeD11:71203179..71203439 -
A11chromosomeA11:121259318..121259573 -
D11chromosomeD11:72382019..72382279 -
A11chromosomeA11:119243572..119243827 -
D11chromosomeD11:69104921..69105181 -
A11chromosomeA11:115797516..115797771 -
At11chromosomeAt11:96739006..96739260 -
scaffold30529supercontigscaffold30529:46190..46450 +
scaffold11559supercontigscaffold11559:460009..460263 -
Scaffold3329supercontigScaffold3329:109513..109773 +
Gbar_A11chromosomeGbar_A11:113009416..113009670 -
D11chromosomeD11:72152194..72152454 -
A11chromosomeA11:116123647..116123901 -
CM017633.1chromosomeCM017633.1:70693881..70694141 -
CM017620.1chromosomeCM017620.1:120422548..120422803 -
CM017659.1chromosomeCM017659.1:73453143..73453398 -
CM017646.1chromosomeCM017646.1:126710104..126710359 -
CM017711.1chromosomeCM017711.1:68974061..68974321 -
CM017698.1chromosomeCM017698.1:114940659..114940914 -
D11chromosomeD11:72719726..72719986 -
A11chromosomeA11:124066126..124066381 -
Chr11chromosomeChr11:132438485..132438744 -
Chr11chromosomeChr11:131193248..131193507 -
Chr11chromosomeChr11:55422..55676 +
B_11chromosomeB_11:102205912..102206171 -
Chr07chromosomeChr07:69529973..69530209 -
chr07chromosomechr07:50179009..50179262 -
Chr_07chromosomeChr_07:49242174..49242428 -
Chr07chromosomeChr07:71652609..71652869 -
Chr07_266064chromosomeChr07_266064:10481..10735 -
Chr07chromosomeChr07:48660875..48661128 -
F11chromosomeF11:99505719..99505979 -
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A01N/A66.8MUCS048View
2JLZM x ZJXSLS, F2 (2008)A_JZ_A08N/A177.9MUVS048View
Sequence
>MUCS0048 ID=MUCS0048; Name=MUCS0048; organism=Gossypium arboreum; type=genetic_marker; length=261bp
GCTTTTCCTTGATGAAATCGGATCCTATACAGTAATTTTTTTTTCATTCC
AAAAAACAAAAAAGAAAAGAAAATAATAATAGGAGAAAATAGCAATGCTT
ATACAAATGTTATTCAGAGACGCTTGAGTAAGTTGATTCATTTACCCAAG
AAAACAAATTCATTCTCAACTCTTGCTTTGCTTATTATTAAATAGTTCCG
TTTCATAGTGTCTTCTTCGAAACTTTCGATGTGGAAAAGGGGATGCTGCT
GCCATTATTAA