MUCS0038, MUCS0038 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUCS0038
AliasMUCS038
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifATG(4)GGAT(2)
PCR ConditionAnnealing temperature: 55
Primer 1MUCS038_F: AAGGTCAAATCTCTCTCCCTCC
Primer 2MUCS038_R: CCAAGCTGTTCTTCTACATTAACC
Product Length197
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01chromosomeA01:3486990..3487184 +
A01chromosomeA01:3185767..3185975 +
CM018215.1chromosomeCM018215.1:2304419..2304628 +
CM018202.1chromosomeCM018202.1:2508688..2508883 +
KI_01chromosomeKI_01:2255721..2255926 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:2477015..2477211 +
D10_01chromosomeD10_01:58262939..58263145 -
CM016614.1chromosomeCM016614.1:3432979..3433166 +
scaffold1463.1supercontigscaffold1463.1:71494..71702 -
scaffold3710_D01supercontigscaffold3710_D01:111231..111439 +
A01chromosomeA01:2246997..2247191 +
Ghir_D01chromosomeGhir_D01:2494838..2495046 +
Ghir_A01chromosomeGhir_A01:2782153..2782347 +
D01chromosomeD01:2372723..2372931 +
A01chromosomeA01:2676001..2676195 +
D01chromosomeD01:2489565..2489773 +
A01chromosomeA01:2801860..2802054 +
A01chromosomeA01:2753823..2754017 +
scaffold7906supercontigscaffold7906:605445..605653 +
scaffold7906supercontigscaffold7906:617227..617435 +
scaffold7906supercontigscaffold7906:606831..607039 +
scaffold12265supercontigscaffold12265:275551..275746 -
scaffold12265supercontigscaffold12265:276933..277143 -
Gbar_D01chromosomeGbar_D01:2535888..2536097 +
Gbar_A01chromosomeGbar_A01:2498191..2498386 +
D01chromosomeD01:2433387..2433596 +
A01chromosomeA01:2498754..2498949 +
CM017623.1chromosomeCM017623.1:2547133..2547338 +
CM017610.1chromosomeCM017610.1:3017700..3017893 +
CM017649.1chromosomeCM017649.1:2358345..2358550 +
CM017636.1chromosomeCM017636.1:2543874..2544069 +
CM017701.1chromosomeCM017701.1:2682966..2683174 +
CM017688.1chromosomeCM017688.1:2525449..2525645 +
D01chromosomeD01:2493521..2493729 +
A01chromosomeA01:2799337..2799531 +
Chr01chromosomeChr01:2517815..2518010 +
Chr01chromosomeChr01:2410046..2410242 +
B_01chromosomeB_01:2591972..2592179 +
Chr02chromosomeChr02:2449311..2449511 +
chr02chromosomechr02:2277776..2277976 +
Chr_02chromosomeChr_02:2441048..2441248 +
Chr02chromosomeChr02:2666467..2666679 +
Chr02chromosomeChr02:2238833..2239089 +
E01chromosomeE01:3301692..3301894 +
F01chromosomeF01:2351134..2351331 +
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch01_At.01N/A24.9MUCS038View
2Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A9.2MUCS038View
3Yumian-1 x T586, RIL (2009)AD_ch01_At.01N/A0MUCS038/200yView
Sequence
>MUCS0038 ID=MUCS0038; Name=MUCS0038; organism=Gossypium arboreum; type=genetic_marker; length=197bp
AAGGTCAAATCTCTCTCCCTCCCTTTCTCTCTTTTAAAAAACCCATTTGG
CTTTCTGTTTGGTGTGTTAGAAAAAACAAAAAAAAAGAAAGTAGAAAGGA
TATGATGATGATGGGATGGATGCTGCATTTTATTGTTCATGTTTCAATGT
GGTAATTATATTTTGGATATTTTGGTTAATGTAGAAGAACAGCTTGG