MGHES0044, MGHES0044 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMGHES0044
AliasMGHES44
MGHES-44
MGHES-044
Genbank IDAI729661
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceAI729661
Source TypeEST
Repeat Motif(GAA)10; (TCA)3; (CAT)3
PCR ConditionAnnealing temperature: 55
Primer 1MGHES44_F: ACCACTTGGGATTGGTTCAA
Primer 2MGHES44_R: GAGGCCACCACATATCGTTT
Product Length216
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAI729661
Publications
YearPublication
2004EST-SSR: A new class of genetic markers in cotton.
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AI729661AI729661Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch26_Dt.12N/A39.41MGHES44View
2Baimian 1 x TM-1 , F2:3 (2014)AD_ch26_Dt.12N/A38.9MGHES44View
3DH962 X Ji Mian 5, F2 (2015)AD_ch26_Dt.12N/A83.41MGHES44View
4DH962 x Ji Mian 5, RIL (2015)AD_ch26_Dt.12N/A66.8MGHES44View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A105.3MGHES44View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A98.2MGHES44View
7AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A114mghes0044View
8DH962 x Jinmian-6, F2 (2009)AD_ch26_Dt.12N/A85.8MGHES-44View
9DH962 x Jinmian-6, F2 (2009)AD_ch26_Dt.12N/A85.8MGHES-44View
10W10 x TM-1, F2:3 (2015)AD_ch12_At.12N/A43MGHES-44View
11CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A65.11MGHES44View
Sequence
>MGHES0044 ID=MGHES0044; Name=MGHES0044; organism=Gossypium hirsutum; type=genetic_marker; length=215bp
ACCACTTGGGATTGGTTCAAACACAAACTGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAACCNNNTGGCTGAGTTGCTTAATAGCCCTTTATTAATGGCG
GCTGCTTTACAAAATCAAACCCCACAACTTATTACAATATCGAGATCAAA
TCAGACCTTGTTACTTAACTAATAGTTCATCATCACATCATCATCAAACG
ATATGTGGTGGCCTC