MGHES0041, MGHES0041 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMGHES0041
AliasMGHES41
MGHES-41
MGHES-041
Genbank IDAI730273
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
Source SequenceAI730273.1
Source TypeEST
Repeat Motif(CAC )8
PCR ConditionAnnealing temperature: 55
Primer 1MGHES41_F: GAAGGAGGGCGAAAAACATA
Primer 2MGHES41_R: TTGGAGATTACGCGACCTTC
Product Length198
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAI730273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:12285521..12285718 +
A10chromosomeA10:20231922..20232122 -
CM018224.1chromosomeCM018224.1:11179755..11179946 +
CM018211.1chromosomeCM018211.1:19333162..19333365 -
D5_10chromosomeD5_10:51230676..51230862 -
KI_10chromosomeKI_10:39862922..39863122 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:108453130..108453338 +
CM016623.1chromosomeCM016623.1:18521406..18521603 +
Dt_chr11chromosomeDt_chr11:9281380..9281577 +
At_chr11chromosomeAt_chr11:69233159..69233359 +
D10chromosomeD10:11073436..11073633 +
A10chromosomeA10:19096644..19096844 -
Ghir_D10chromosomeGhir_D10:11555291..11555488 +
Ghir_A10chromosomeGhir_A10:19549222..19549422 -
D10chromosomeD10:11382868..11383065 +
A10chromosomeA10:19183789..19183989 -
D10chromosomeD10:11717070..11717267 +
A10chromosomeA10:19160506..19160706 -
D10chromosomeD10:11922982..11923179 +
A10chromosomeA10:20038174..20038377 -
Dt10chromosomeDt10:12076687..12076878 +
scaffold5854supercontigscaffold5854:123906..124109 +
scaffold4956supercontigscaffold4956:73631..73822 +
Gbar_D10chromosomeGbar_D10:10981652..10981843 +
Gbar_A10chromosomeGbar_A10:19607236..19607439 -
D10chromosomeD10:11571117..11571308 +
A10chromosomeA10:19400583..19400786 -
CM017632.1chromosomeCM017632.1:11371196..11371384 +
CM017619.1chromosomeCM017619.1:19461489..19461695 -
CM017658.1chromosomeCM017658.1:11660866..11661063 +
CM017645.1chromosomeCM017645.1:20067438..20067641 -
CM017710.1chromosomeCM017710.1:11470518..11470709 +
CM017697.1chromosomeCM017697.1:19742775..19742978 -
D10chromosomeD10:11830488..11830685 +
A10chromosomeA10:20122718..20122918 -
Chr10chromosomeChr10:59237854..59238057 +
Chr10chromosomeChr10:20864054..20864262 -
Chr10chromosomeChr10:10904233..10904421 +
B_10chromosomeB_10:86691257..86691469 -
Chr11chromosomeChr11:11081258..11081449 +
Chr11chromosomeChr11:11214050..11214244 +
Chr11chromosomeChr11:9390710..9391009 +
Chr11chromosomeChr11:7365316..7365507 +
E10chromosomeE10:97463500..97463703 -
F10chromosomeF10:12344105..12344311 +
Chr10chromosomeChr10:144084696..144084887 -
Publications
YearPublication
2004EST-SSR: A new class of genetic markers in cotton.
Germplasm
Stock NameType
Acala Maxxaaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AI730273.1AI730273.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch10_At.10N/A23.9MGHES-41View
Sequence
>MGHES0041 ID=MGHES0041; Name=MGHES0041; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
GAAGGAGGGCGAAAAACATAAAGATAAAGCTCCCACTTCCTCCACCAATC
ACCACCACCACCACCACCACCACAAAAAGAAGAGCAAGATGTCTTCTTCA
TCGCCCGCCAATCAAGTGAGGGCTTCTCACATCCTCATCAAGCACCAAGG
CTCCCGCCGTAAGGCCTCTTGGAAGGATCCTGAAGGTCGCGTAATCTCCA
A