JESPR0228, JESPR0228 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	JESPR0228
Alias	JESPR228
Genbank ID	AF351466
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	AF351466.1
Source Type	genomic
Repeat Motif	(GA)21
Primer 1	JESPR0228_F: CAGAACAACACCATCAACACTCTCAG
Primer 2	JESPR0228_R: GGCAAGCAAAGCAAAACTC
Polymorphism	P_ JESPR0228
Publication	[view all]
Comment	Primer data obtained in 2002

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AF351466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D07	chromosome	D07:25280291..25280537 -
CM018221.1	chromosome	CM018221.1:24439497..24439755 -
D5_07	chromosome	D5_07:22790928..22791166 -
D10_07	chromosome	D10_07:30398899..30399132 +
Dt_chr1	chromosome	Dt_chr1:58574187..58574435 -
D07	chromosome	D07:24296077..24296325 -
Ghir_D07	chromosome	Ghir_D07:24771733..24771979 -
D07	chromosome	D07:24139885..24140133 -
D07	chromosome	D07:24803700..24803947 -
D07	chromosome	D07:24226763..24227008 -
Gbar_D07	chromosome	Gbar_D07:24661413..24661667 -
D07	chromosome	D07:24513783..24514039 -
CM017629.1	chromosome	CM017629.1:24786669..24786908 -
CM017655.1	chromosome	CM017655.1:25040437..25040665 -
CM017642.1	chromosome	CM017642.1:33403701..33403945 -
CM017707.1	chromosome	CM017707.1:24829021..24829259 -
D07	chromosome	D07:25079024..25079272 -
B_07	chromosome	B_07:33141721..33141948 -
Chr01	chromosome	Chr01:24699175..24699397 -
chr01	chromosome	chr01:21159945..21160183 -
Chr_01	chromosome	Chr_01:19153229..19153548 -
Chr01	chromosome	Chr01:19709127..19709403 -
Chr01	chromosome	Chr01:16083311..16083613 -
Chr01	chromosome	Chr01:19373380..19373692 -
Chr07	chromosome	Chr07:92310847..92311087 -

Publications


Year	Publication
2001	Reddy O, Pepper A, Abdurakhmonov I, Saha S, Jenkins J, Brooks T, Bolek Y, El-Zik K. New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. Journal of cotton science. 2001; 5(2):103-113

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AF351466.1	AF351466.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch07_At.07	N/A	86.8	JESPR228b	View
2	TM-1 x 3-79, RIL (2012)	AD_ch16_Dt.07	N/A	76.37	JESPR228b	View
3	TM-1 x 3-79, RIL (2014)	AD_ch16_Dt.07	N/A	48.4	JESPR228b	View
4	Monsanto SSR Bin Map, (2009)	AD_ch16_Dt.07	N/A	121	JESPR228b	View
5	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch16_Dt.07	N/A	100.8	JESPR228a	View
6	TM-1 x 3-79, RIL (2012)	AD_ch07_At.07	N/A	86.06	JESPR228a	View
7	TM-1 x 3-79, RIL (2014)	AD_ch07_At.07	N/A	52.5	JESPR228a	View
8	Monsanto SSR Bin Map, (2009)	AD_ch07_At.07	N/A	41	JESPR228a	View
9	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch16_Dt.07	N/A	57.52	JESPR228	View
10	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch07_At.07	N/A	37.52	JESPR228	View
11	Guazuncho-2 x VH8-4602, RIL (2009)	AD_ch16_Dt.07	N/A	21.24	JESPR228	View
12	Guazuncho-2 x VH8-4602, RIL (2009)	AD_ch07_At.07	N/A	19.88	JESPR228	View
13	Hai-7124 x Junmian-1, BC1 (2008) part	AD_ch07_At.07	N/A	153.7	JESPR228	View
14	Handan-208 x Pima-90, F2:3 (2007)	AD_ch07_At.07	N/A	16.2	JESPR228b*	View
15	Handan-208 x Pima-90, F2:3 (2007)	AD_ch16_Dt.07	N/A	80.7	JESPR228a*	View
16	AD-genome wide Reference Map (2009)	AD_ch16_Dt.07	N/A	143	jespr0228	View
17	AD-genome wide Reference Map (2009)	AD_ch07_At.07	N/A	107	jespr0228	View
18	TM-1 x Hai-7124, BC1 (2007)	AD_ch07_At.07	N/A	59.8	JESPR228-310	View
19	TM-1 x Hai-7124, BC1 (2008)	AD_ch07_At.07	N/A	57.44	JESPR228-310	View
20	TM-1 x Hai-7124, BC1 (2012)	AD_ch07_At.07	N/A	65.2	JESPR228-310	View
21	Handan-208 x Pima-90, F2:3 (2007)	AD_ch07_At.07	N/A	43.4	JESPR0228	View
22	TM-1 x 3-79, RIL (2012.v3)	AD_ch07_At.07	N/A	52.49	JESPR228a	View
23	TM-1 x 3-79, RIL (2012.v3)	AD_ch16_Dt.07	N/A	48.42	JESPR228b	View
24	PD 94042 x (AD)4-08, F2 (2016)	AD_ch16_Dt.07	N/A	117.8	JESPR228a	View
25	PD 94042 x (AD)4-08, F2 (2016)	AD_ch16_Dt.07	N/A	117.8	JESPR228b	View

Sequence

>JESPR0228 ID=JESPR0228; Name=JESPR0228; organism=Gossypium hirsutum; type=genetic_marker; length=247bp
CAGAACAACACCATCAACACTCTCAGCCAAAACTAGGGTTCCCATTTATC
CTCCTATCTTTGAAAAACGCCCAACCATCTGATTTTAAGCCCTTTCCCTC
ACTTTTTTTTTTCAGACGTAAACCCGGATACCAAAAAACAGGTTTTTTTT
TTACCGAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAAGGGAATANACATANAAGAGTTTTGCTTTGCTTGCC

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JESPR0228, JESPR0228 (genetic_marker) Gossypium hirsutum