JESPR0156, JESPR0156 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	JESPR0156
Alias	JESPR156
Genbank ID	AF351394
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	AF351394.1
Source Type	genomic
Repeat Motif	(CTT)6CCTT
Primer 1	JESPR0156_F: GCCTTCAATCAATTCATACG
Primer 2	JESPR0156_R: GAAGGAGAAAGCAACGAATTAG
Polymorphism	P_ JESPR0156
Publication	[view all]
Comment	Primer data obtained in 2002

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AF351394

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D02	chromosome	D02:2124387..2124471 +
CM018216.1	chromosome	CM018216.1:1758282..1758372 +
D10_03	chromosome	D10_03:62803031..62803115 +
D10_03	chromosome	D10_03:62794739..62794820 +
scaffold1140.1	supercontig	scaffold1140.1:134082..134166 +
D02	chromosome	D02:2088051..2088135 +
A02	chromosome	A02:1588828..1588924 +
Ghir_D02	chromosome	Ghir_D02:2022211..2022295 +
Ghir_A02	chromosome	Ghir_A02:1744763..1744853 +
D02	chromosome	D02:1847013..1847097 +
A02	chromosome	A02:1647768..1647864 +
D02	chromosome	D02:2035425..2035509 +
A02	chromosome	A02:1742422..1742512 +
D02	chromosome	D02:1900474..1900558 +
A02	chromosome	A02:1677795..1677885 +
Dt02	chromosome	Dt02:1641980..1642070 +
scaffold12917	supercontig	scaffold12917:158342..158432 +
Gbar_D02	chromosome	Gbar_D02:1949086..1949176 +
D02	chromosome	D02:1764245..1764335 +
CM017624.1	chromosome	CM017624.1:2052449..2052533 +
CM017650.1	chromosome	CM017650.1:2164892..2164973 +
CM017637.1	chromosome	CM017637.1:1734406..1734502 +
CM017702.1	chromosome	CM017702.1:1663218..1663302 +
CM017689.1	chromosome	CM017689.1:1656735..1656822 +
D02	chromosome	D02:2039205..2039289 +
Chr03	chromosome	Chr03:130760485..130760587 -
Chr03	chromosome	Chr03:1744630..1744710 +
Chr03	chromosome	Chr03:1690059..1690152 +
B_03	chromosome	B_03:105231678..105231795 -
Chr05	chromosome	Chr05:1895064..1895160 +
chr05	chromosome	chr05:1585766..1585847 +
Chr05_5086660	chromosome	Chr05_5086660:343..430 -
Chr05	chromosome	Chr05:1622572..1622652 +
Chr05	chromosome	Chr05:1332574..1332658 +
E03	chromosome	E03:2657151..2657234 +
F03	chromosome	F03:1672455..1672559 +
Chr05	chromosome	JESPR0156:1..670 . Chr05:1639306..1640050 +
scaffold370	supercontig	JESPR0156:1..670 . scaffold370:421061..421805 -

Publications


Year	Publication
2001	Reddy O, Pepper A, Abdurakhmonov I, Saha S, Jenkins J, Brooks T, Bolek Y, El-Zik K. New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. Journal of cotton science. 2001; 5(2):103-113

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AF351394.1	AF351394.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	7235 x TM-1, RIL (2007)	AD_ch14_Dt.02	N/A	72.5	JESPR156	View
2	Xinluzao-1 x Hai-7124, F2 (2008)	AD_chU	N/A	6.3	JESPR156	View
3	Emian-22 x 3-79, BC1 (2011)	AD_ch14_Dt.02	N/A	96.54	JESPR156	View
4	Yumian-1 x T586, RIL (2006)	AD_ch02_At.02	N/A	34.9	JESPR156	View
5	Yumian-1 x T586, RIL (2015)	AD_ch02_At.02	N/A	0	JESPR156	View
6	Yumian-1 x 7235, RIL (2015)	AD_ch02_At.02	N/A	14.7	JESPR156	View
7	901-001 x sGK156, F2 (2019)	AD_ch14_Dt.02	N/A	0	JESPR156	View
8	TM-1 x 3-79, RIL (2012)	AD_ch14_Dt.02	N/A	124.11	JESPR156a	View
9	TM-1 x 3-79, RIL (2014)	AD_ch14_Dt.02	N/A	2.3	JESPR156a	View
10	Monsanto SSR Bin Map, (2009)	AD_ch02_At.02	N/A	61	JESPR156a	View
11	TM-1 x 3-79, RIL (2012)	AD_ch14_Dt.02	N/A	121.34	JESPR156c	View
12	Monsanto SSR Bin Map, (2009)	AD_ch14_Dt.02	N/A	121	JESPR156c	View
13	TM-1 x 3-79, RIL (2012)	AD_ch02_At.02	N/A	112.25	JESPR156b	View
14	TM-1 x 3-79, RIL (2014)	AD_ch02_At.02	N/A	112.7	JESPR156b	View
15	Monsanto SSR Bin Map, (2009)	AD_ch14_Dt.02	N/A	141	JESPR156b	View
16	TM-1 x Hai-7124, BC1 (2008)	AD_ch14_Dt.02	N/A	103	JESPR156-90	View
17	TM-1 x Hai-7124, BC1 (2012)	AD_ch14_Dt.02	N/A	9.3	JESPR156-90	View
18	Yumian-1 x T586, RIL (2009)	AD_ch02_At.02	N/A	0	JESPR156/100t	View
19	TM-1 x 3-79, RIL (2012.v3)	AD_ch02_At.02	N/A	112.66	JESPR156b	View
20	TM-1 x 3-79, RIL (2012.v3)	AD_ch14_Dt.02	N/A	2.32	JESPR156a	View

Sequence

>JESPR0156 ID=JESPR0156; Name=JESPR0156; organism=Gossypium hirsutum; type=genetic_marker; length=85bp
GCCTTCAATCAATTCATACGGTTCTTTTCTTCTTCTTCTTCTTCTTCCTT
ATATATCTGCCTTCTAATTCGTTGCTTTCTCCTTC

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JESPR0156, JESPR0156 (genetic_marker) Gossypium hirsutum