JESPR0107, JESPR0107 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	JESPR0107
Alias	JESPR107
Genbank ID	AF351346
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	AF351346.1
Source Type	genomic
Repeat Motif	(CA)11
Primer 1	JESPR0107_F: GACAATCCAGGCAGTCAGAG
Primer 2	JESPR0107_R: CATACTAATTAGCCATTCTCACCC
Polymorphism	P_ JESPR0107
Publication	[view all]
Comment	Primer data obtained in 2002

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AF351346

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM016616.1	chromosome	CM016616.1:2120726..2120870 +
Chr05	chromosome	Chr05:43483597..43483731 -
Chr05	chromosome	Chr05:45146282..45146518 -

Publications


Year	Publication
2001	Reddy O, Pepper A, Abdurakhmonov I, Saha S, Jenkins J, Brooks T, Bolek Y, El-Zik K. New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. Journal of cotton science. 2001; 5(2):103-113

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AF351346.1	AF351346.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	CCRI-36 x Hai-7124, F2 (2007)	AD_ch03_At.03	N/A	113.7	JESP107	View
2	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch03_At.03	N/A	106.89	JESPR107	View
3	Guazuncho-2 x VH8-4602, RIL (2009)	AD_ch03_At.03	N/A	70.4	JESPR107	View
4	Xinluzao-1 x Hai-7124, F2 (2008)	AD_chU	N/A	0	JESPR107	View
5	Emian-22 x 3-79, BC1 (2011)	AD_ch03_At.03	N/A	151.89	JESPR107	View
6	Yumian-1 x T586, RIL (2006)	AD_ch03_At.03	N/A	8.2	JESPR107	View
7	Yumian-1 x T586, RIL (2015)	AD_ch03_At.03	N/A	11.2	JESPR107	View
8	PD 94042 x (AD)4-08, F2 (2016)	AD_ch03_At.03	N/A	0	JESPR107	View
9	AD-genome wide Reference Map (2009)	AD_ch03_At.03	N/A	193	jespr0107	View
10	TM-1 x Hai-7124, BC1 (2008)	AD_ch03_At.03	N/A	6.67	JESPR107-125	View
11	TM-1 x Hai-7124, BC1 (2012)	AD_ch03_At.03	N/A	10.8	JESPR107-125	View
12	Yumian-1 x T586, RIL (2009)	AD_ch03_At.03	N/A	8.2	JESPR107/120t	View

Sequence

>JESPR0107 ID=JESPR0107; Name=JESPR0107; organism=Gossypium hirsutum; type=genetic_marker; length=133bp
GACAATCCAGGCAGTCAGAGTCAAAGATGTAAATATCTTTCTTTTTACCT
GGGGCTATCCCTACACACACACACACACACACACATACACGCCGGACACT
TTTTTTTTTGGGTGAGAATGGCTAATTAGTATG

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JESPR0107, JESPR0107 (genetic_marker) Gossypium hirsutum