JESPR0101, JESPR0101 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0101
AliasJESPR101
Genbank IDAF351340
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351340.1
Source Typegenomic
Repeat Motif(TA)3(GT)15
Primer 1JESPR0101_F: CCAAGTCAAGGTGAGTTATATG
Primer 2JESPR0101_R: GCTCTTTGTTACTGAAATGGG
PolymorphismP_ JESPR0101
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:43720735..43720861 +
D03chromosomeD03:32782043..32782177 -
CM018203.1chromosomeCM018203.1:42174802..42174922 +
CM018217.1chromosomeCM018217.1:33536999..33537119 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:84077111..84077221 -
D10_02chromosomeD10_02:32220428..32220538 -
Dt_chr3chromosomeDt_chr3:38672649..38672767 +
A02chromosomeA02:40971037..40971163 +
D03chromosomeD03:26940776..26940910 -
Ghir_D03chromosomeGhir_D03:32934338..32934472 -
A02chromosomeA02:43134840..43134966 +
D03chromosomeD03:34563379..34563513 -
A02chromosomeA02:43453231..43453357 +
D03chromosomeD03:33860887..33861005 -
A02chromosomeA02:42906392..42906520 +
D03chromosomeD03:33280533..33280667 -
At02chromosomeAt02:44229434..44229554 +
Dt03chromosomeDt03:28482823..28482943 -
scaffold4364supercontigscaffold4364:32564..32684 +
scaffold2657supercontigscaffold2657:107509..107629 -
Gbar_A02chromosomeGbar_A02:42714018..42714138 +
Gbar_D03chromosomeGbar_D03:31951016..31951138 -
A02chromosomeA02:43160505..43160625 +
D03chromosomeD03:34555325..34555447 -
CM017611.1chromosomeCM017611.1:42434673..42434791 +
CM017625.1chromosomeCM017625.1:32926572..32926690 -
CM017637.1chromosomeCM017637.1:45023612..45023734 +
CM017651.1chromosomeCM017651.1:36926760..36926876 -
CM017689.1chromosomeCM017689.1:42947721..42947841 +
CM017703.1chromosomeCM017703.1:34354499..34354623 -
A02chromosomeA02:44341548..44341674 +
D03chromosomeD03:34935705..34935839 -
Chr02chromosomeChr02:27799031..27799141 +
Chr03chromosomeChr03:80726384..80726494 -
B_04chromosomeB_04:24460333..24460443 +
Chr03chromosomeChr03:31325896..31326026 -
chr03chromosomechr03:14894013..14894269 +
Chr_03chromosomeChr_03:11958766..11959009 +
Chr03chromosomeChr03:10728463..10728585 +
Chr03chromosomeChr03:13073604..13073818 +
Chr02chromosomeChr02:48355324..48355440 -
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351340.1AF351340.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch02_At.02N/A0.8JESPR101View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch17_Dt.03N/A28.19JESPR101View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch02_At.02N/A43.73JESPR101View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch17_Dt.03N/A30.32JESPR101View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch02_At.02N/A35.67JESPR101View
6Handan-208 x Pima-90, F2:3 (2007)AD_ch02_At.02N/A0JESPR101View
7Xinluzao-1 x Hai-7124, F2 (2008)AD_ch02_At.02N/A112.6JESPR101View
8Emian-22 x 3-79, BC1 (2011)AD_ch02_At.02N/A76.03JESPR101View
9(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch02_At.02N/A55.9JESPR101View
107235 x TM-1, F2:3 (2005)AD_ch02_At.02N/A5.3JESPR101View
11HS427-10 x TM-1, F2:3 (2005)AD_ch02_At.02N/A74.3JESPR101View
12PD6992 x SM3, F2:3 (2005)AD_ch02_At.02N/A0JESPR101View
13Yumian-1 x 7235, RIL (2015)AD_ch17_Dt.03N/A42.7JESPR101View
14TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch17_Dt.03N/A47.5JESPR101View
15W10 x TM-1, F2:3 (2015)AD_ch02_At.02N/A149.7JESPR101View
16CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A64.5JESPR101View
17CCRI-36 x Hai-7124, F2 (2007)AD_ch02_At.02N/A39JESP101bView
18CCRI-36 x Hai-7124, F2 (2007)AD_ch17_Dt.03N/A69.6JESP101aView
19Handan-208 x Pima-90, F2:3 (2007)AD_ch17_Dt.03N/A193.2JESPR101aView
20TM-1 x 3-79, RIL (2012)AD_ch02_At.02N/A60.15JESPR101aView
21TM-1 x 3-79, RIL (2014)AD_ch02_At.02N/A60.9JESPR101aView
22Monsanto SSR Bin Map, (2009)AD_ch02_At.02N/A61JESPR101aView
23AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A102jespr0101View
24AD-genome wide Reference Map (2009)AD_ch02_At.02N/A70jespr0101View
25AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A170jespr0101View
26LMY22 x LY343, RIL (2016)chr.2N/A61.3jespr0101View
27TM-1 x 3-79, RIL (2012)AD_ch17_Dt.03N/A71.03JESPR101bView
28TM-1 x 3-79, RIL (2014)AD_ch17_Dt.03N/A54JESPR101bView
29TM-1 x Hai-7124, BC1 (2007)AD_ch02_At.02N/A60.8JESPR101-180View
30TM-1 x Hai-7124, BC1 (2008)AD_ch02_At.02N/A49.69JESPR101-180View
31TM-1 x Hai-7124, BC1 (2012)AD_ch02_At.02N/A50.9JESPR101-180View
32TM-1 x Hai-7124, BC1 (2007)AD_ch17_Dt.03N/A66.9JESPR101-155View
33TM-1 x Hai-7124, BC1 (2008)AD_ch17_Dt.03N/A31.64JESPR101-155View
34TM-1 x Hai-7124, BC1 (2012)AD_ch17_Dt.03N/A71.9JESPR101-155View
35Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch23_Dt.09N/A53.3JESPR101-125View
36CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A53.25JESPR101View
37TM-1 x 3-79, RIL (2012.v3)AD_ch02_At.02N/A60.93JESPR101aView
38TM-1 x 3-79, RIL (2012.v3)AD_ch17_Dt.03N/A53.95JESPR101bView
39PD 94042 x (AD)4-08, F2 (2016)AD_ch17_Dt.03N/A114.8JESPR101View
Sequence
>JESPR0101 ID=JESPR0101; Name=JESPR0101; organism=Gossypium hirsutum; type=genetic_marker; length=127bp
CCAAGTCAAGGTGAGTTATATGTATATATGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGGATATAGATATAAGCTATTTTTCTTGTTTAATGATTTCAG
AATATACCCATTTCAGTAACAAAGAGC