JESPR0101, JESPR0101 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0101
AliasJESPR101
Genbank IDAF351340
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351340.1
Source Typegenomic
Repeat Motif(TA)3(GT)15
Primer 1JESPR0101_F: CCAAGTCAAGGTGAGTTATATG
Primer 2JESPR0101_R: GCTCTTTGTTACTGAAATGGG
PolymorphismP_ JESPR0101
Publication[view all]
CommentPrimer data obtained in 2002
Germplasm
Stock NameType
Tamcot Sphinxcultivar
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
JESPR0101_FJESPR0101_FGossypium hirsutumprimer
JESPR0101_RJESPR0101_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
JESPR101JESPR101Gossypium hirsutummarker_locus
JESP101bJESP101bGossypium hirsutummarker_locus
JESP101aJESP101aGossypium hirsutummarker_locus
JESPR101aJESPR101aGossypium hirsutummarker_locus
jespr0101jespr0101Gossypium hirsutummarker_locus
JESPR101bJESPR101bGossypium hirsutummarker_locus
JESPR101-180JESPR101-180Gossypium hirsutummarker_locus
JESPR101-155JESPR101-155Gossypium hirsutummarker_locus
JESPR101-125JESPR101-125Gossypium hirsutummarker_locus
JESPR101JESPR101-53.247Gossypium hirsutummarker_locus
JESPR101aJESPR101a-60.928Gossypium hirsutummarker_locus
JESPR101bJESPR101b-53.952Gossypium hirsutummarker_locus
JESPR101JESPR101-114.8Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351340.1AF351340.1Gossypium hirsutumsequence_feature


Sequence
>JESPR0101 ID=JESPR0101|Name=JESPR0101|organism=Gossypium hirsutum|type=genetic_marker|length=127bp
CCAAGTCAAGGTGAGTTATATGTATATATGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGGATATAGATATAAGCTATTTTTCTTGTTTAATGATTTCAG
AATATACCCATTTCAGTAACAAAGAGC
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
17235 x TM-1, RIL (2007)7235 x TM-1, RIL (2007).7T-RIL_A02N/AAD_chr.020.8JESPR101View
2Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c17N/AAD_chr.1728.19JESPR101View
3Guazuncho-2 x VH8-4602, consensus (2009)Guazuncho-2 x VH8-4602, consensus (2009).GV-cons_c02N/AAD_chr.0243.73JESPR101View
4Guazuncho-2 x VH8-4602, RIL (2009)Guazuncho-2 x VH8-4602, RIL (2009).GV-RIL_ch17N/AAD_chr.1730.32JESPR101View
5Guazuncho-2 x VH8-4602, RIL (2009)Guazuncho-2 x VH8-4602, RIL (2009).GV-RIL_ch02N/AAD_chr.0235.67JESPR101View
6Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr02N/AAD_chr.020JESPR101View
7Xinluzao-1 x Hai-7124, F2 (2008)Xinluzao-1 x Hai-7124, F2 (2008).XH-F2_lg6/chr02N/AAD_chr.02112.6JESPR101View
8Emian-22 x 3-79, BC1 (2011)Emian-22 x 3-79, BC1 (2011).E3-BC1_chr02N/AAD_chr.0276.03JESPR101View
9(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr02-2N/AAD_chr.0255.9JESPR101View
107235 x TM-1, F2:3 (2005)7T-F2:3_chr02N/AAD_chr.025.3JESPR101View
11HS427-10 x TM-1, F2:3 (2005)HT-F2:3_chr02N/AAD_chr.0274.3JESPR101View
12PD6992 x SM3, F2:3 (2005)PDSM-F2:3_chr02N/AAD_chr.020JESPR101View
13Yumian-1 x 7235, RIL (2015)Y7-RIL_chr17N/AAD_chr.1742.7JESPR101View
14TM-1 x (TX-0256 + TX-1046), CSIL (2016)TTT-CSIL_chr17N/AAD_chr.1747.5JESPR101View
15W10 x TM-1, F2:3 (2015)WT-F2:3_chr02-1N/AAD_chr.02149.7JESPR101View
16CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr02N/AAD_chr.0264.5JESPR101View
17CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr02N/AAD_chr.0239JESP101bView
18CCRI-36 x Hai-7124, F2 (2007)CCRI-36 x Hai-7124, F2 (2007).CH-F2_chr17N/AAD_chr.1769.6JESP101aView
19Handan-208 x Pima-90, F2:3 (2007)Handan-208 x Pima-90, F2:3 (2007).HP-F2:3_chr17N/AAD_chr.17193.2JESPR101aView
20Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr02N/AAD_chr.0270JESPR101aView
21TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c02N/AAD_chr.0260.15JESPR101aView
22TM-1 x 3-79, RIL (2014)T3-RIL.14_chr02N/AAD_chr.0260.9JESPR101aView
23AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr17N/AAD_chr.17102jespr0101View
24AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr02N/AAD_chr.0270jespr0101View
25AD-genome wide Reference Map (2009)AD-genome wide Reference Map (2009).Ref-chr23N/AAD_chr.23170jespr0101View
26TM-1 x 3-79, RIL (2012)TM-1 x 3-79, RIL (2012).T3-RIL.12_c17N/AAD_chr.1771.03JESPR101bView
27TM-1 x 3-79, RIL (2014)T3-RIL.14_chr17N/AAD_chr.1754JESPR101bView
28TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr02N/AAD_chr.0260.8JESPR101-180View
29TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr02/A2N/AAD_chr.0249.69JESPR101-180View
30TM-1 x Hai-7124, BC1 (2007)TM-1 x Hai-7124, BC1 (2007).TH-BC1_chr17N/AAD_chr.1766.9JESPR101-155View
31TM-1 x Hai-7124, BC1 (2008)TM-1 x Hai-7124, BC1 (2008).TH-BC1.08_chr17/D3N/AAD_chr.1731.64JESPR101-155View
32Vsg x (TM-1 x Hai-7124), DH (2005)Vsg x (TM-1 x Hai-7124), DH (2005).VTH-DH.05_chr23N/AAD_chr.2353.3JESPR101-125View
33CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr02N/AAt.0253.25JESPR101-53.247View
34TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.02N/AAD_chr.0260.93JESPR101a-60.928View
35TM-1 x 3-79, RIL (2012.v3)T3-RIL.12v3_chr.17N/AAD_chr.1753.95JESPR101b-53.952View
36PD 94042 x (AD)4-08, F2 (2016)PA-F2_chr17-1N/ADt.03114.8JESPR101-114.8View
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351340