JESPR0083, JESPR0083 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0083
AliasJESPR083
Genbank IDAF351322
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351322.1
Source Typegenomic
Repeat Motif(CT)6
Primer 1JESPR0083_F: CATAGGCAAGCCTTGTAGCAATC
Primer 2JESPR0083_R: CCTCTTCTTTCACTACCACCTGC
PolymorphismP_ JESPR0083
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351322
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D10chromosomeD10:45842408..45842562 +
A10chromosomeA10:26407858..26408012 -
CM018224.1chromosomeCM018224.1:43883845..43883999 +
CM018211.1chromosomeCM018211.1:25552562..25552716 +
D5_10chromosomeD5_10:20864504..20864658 -
KI_10chromosomeKI_10:15624454..15624608 +
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:36954373..36954527 -
D10_10chromosomeD10_10:21310129..21310283 -
CM016623.1chromosomeCM016623.1:94104316..94104470 +
At_chr11chromosomeAt_chr11:84215933..84216087 +
Dt_chr11chromosomeDt_chr11:36503271..36503425 -
D10chromosomeD10:43132082..43132236 +
A10chromosomeA10:23693200..23693354 -
Scaffold3250supercontigScaffold3250:50102..50256 +
Ghir_D10chromosomeGhir_D10:45914756..45914910 +
D10chromosomeD10:45850395..45850549 +
A10chromosomeA10:25445022..25445176 +
D10chromosomeD10:45007251..45007405 +
A10chromosomeA10:25557583..25557737 +
D10chromosomeD10:43555989..43556143 +
A10chromosomeA10:26411010..26411164 +
scaffold5661supercontigscaffold5661:50809..50963 +
Gbar_D10chromosomeGbar_D10:43500186..43500340 +
Gbar_A10chromosomeGbar_A10:25850962..25851116 +
D10chromosomeD10:44835627..44835781 +
A10chromosomeA10:25706347..25706501 +
CM017632.1chromosomeCM017632.1:43746796..43746950 +
CM017619.1chromosomeCM017619.1:25748226..25748380 +
CM017658.1chromosomeCM017658.1:45656878..45657032 +
CM017645.1chromosomeCM017645.1:26797991..26798145 +
CM017710.1chromosomeCM017710.1:44945915..44946069 +
CM017697.1chromosomeCM017697.1:25964320..25964474 +
D10chromosomeD10:45772930..45773084 +
A10chromosomeA10:26608668..26608822 +
A10chromosomeA10:26592859..26593013 +
Chr10chromosomeChr10:94626786..94626940 -
Chr10chromosomeChr10:87971201..87971355 -
Chr10chromosomeChr10:41591881..41592035 +
B_10chromosomeB_10:31742344..31742499 +
Chr11chromosomeChr11:22995148..22995302 -
chr11chromosomechr11:35124319..35124473 +
Chr_11chromosomeChr_11:28533777..28533931 +
Chr11chromosomeChr11:44149208..44149362 +
Chr11chromosomeChr11:30768724..30768878 +
Chr11chromosomeChr11:23792807..23792961 +
Chr11chromosomeChr11:30792912..30793066 +
E10chromosomeE10:34789506..34789660 +
F10chromosomeF10:67096076..67096228 -
Chr10chromosomeChr10:44372725..44372879 +
Chr11chromosomeJESPR0083:3..242 .
Chr11:41987967..41988205 +
Chr6chromosomeJESPR0083:3..242 .
Chr6:13177097..13177335 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351322.1AF351322.1Gossypium hirsutumsequence_feature


Sequence
>JESPR0083 ID=JESPR0083; Name=JESPR0083; organism=Gossypium hirsutum; type=genetic_marker; length=156bp
CATAGGCAAGCCTTGTAGCAATCCTGAAGAAGAATATGATGATGAAGTAA
GGGTCTTCTTTCTTTTCTTCATAAAATTCCCAAGTTCTCTCTCTCTCTAT
ATGTATTGATAATGAACTTTTGCTTTGATTTAAGCAGGTGGTAGTGAAAG
AAGAGG