JESPR0056, JESPR0056 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0056
AliasJESPR056
Genbank IDAF351295
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351295.1
Source Typegenomic
Repeat Motif(GAA)23
Primer 1JESPR0056_F: CCAGTTAGCACCAATTTAGG
Primer 2JESPR0056_R: CCACAATAACACACTGGAATC
PolymorphismP_ JESPR0056
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351295
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351295.1AF351295.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Acala-44 x Pima S-7, F2 (2004)AD_ch18_Dt.13N/A4.8JESPR56View
2H18 x 3-79, F2 (2005)AD_ch18_Dt.13N/A92.9JESPR56View
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch18_Dt.13N/A65.5JESPR56View
4Emian-22 x 3-79, BC1 (2011)AD_ch01_At.01N/A33.57JESPR56aView
5Emian-22 x 3-79, BC1 (2011)AD_ch10_At.10N/A119.88JESPR56bView
6Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch10_At.10N/A59.1JESPR056View
7Guazuncho-2 x VH8-4602, consensus (2009)AD_ch10_At.10N/A51.24JESPR056View
8Monsanto SSR Bin Map, (2009)AD_ch18_Dt.13N/A61JESPR056View
9Handan-208 x Pima-90, F2:3 (2007)AD_ch18_Dt.13N/A117.3JESPR56*View
10TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A60JESPR056aView
11TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A84.4JESPR056aView
12Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A81JESPR056aView
13TM-1 x 3-79, RIL (2012)AD_ch18_Dt.13N/A60.48JESPR056bView
14TM-1 x 3-79, RIL (2014)AD_ch18_Dt.13N/A61.5JESPR056bView
15Monsanto SSR Bin Map, (2009)AD_ch18_Dt.13N/A61JESPR056bView
16AD-genome wide Reference Map (2009)AD_ch01_At.01N/A85jespr0056View
17AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A58jespr0056View
18AD-genome wide Reference Map (2009)AD_ch10_At.10N/A30jespr0056View
19AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A126jespr0056View
20TM-1 x 3-79, RIL (2012)AD_ch03_At.03N/A84.92JESPR056cView
21TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A31.4JESPR056cView
22TM-1 x Hai-7124, BC1 (2007)AD_ch01_At.01N/A58.2JESPR56-135View
23TM-1 x Hai-7124, BC1 (2008)AD_ch01_At.01N/A62.1JESPR56-135View
24Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch01_At.01N/A31.5JESPR56-135View
25TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A71.9JESPR56-135View
26TM-1 x Hai-7124, BC1 (2007)AD_ch10_At.10N/A43.2JESPR56-100View
27TM-1 x Hai-7124, BC1 (2008)AD_ch10_At.10N/A55.3JESPR56-100View
28TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A72.8JESPR56-100View
29TM-1 x Hai-7124, BC1 (2007)AD_ch18_Dt.13N/A57.2JESPR56-195View
30TM-1 x Hai-7124, BC1 (2008)AD_ch18_Dt.13N/A56.88JESPR56-195View
31TM-1 x Hai-7124, BC1 (2012)AD_ch18_Dt.13N/A63.9JESPR56-195View
32TM-1 x Hai-7124, BC1 (2007)AD_ch20_Dt.10N/A60.9JESPR56-170View
33TM-1 x Hai-7124, BC1 (2008)AD_ch20_Dt.10N/A60.42JESPR56-170View
34TM-1 x Hai-7124, BC1 (2012)AD_ch20_Dt.10N/A53.5JESPR56-170View
35Vsg x (TM-1 x Hai-7124), DH (2005)AD_ch10_At.10N/A19.6JESPR56-102View
36GX1135 x GX100-2, F2 (2013)AD_ch02_At.02N/A0JESP056View
37TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A84.38JESPR056aView
38TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A31.45JESPR056cView
39TM-1 x 3-79, RIL (2012.v3)AD_ch18_Dt.13N/A61.47JESPR056bView
Sequence
>JESPR0056 ID=JESPR0056; Name=JESPR0056; organism=Gossypium hirsutum; type=genetic_marker; length=191bp
CCAGTTAGCACCAATTTAGGGTTTAGGCAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATA
AAAAGAAGAGGAGGAGGAAGAGGAGGAGAAGAAGAAGAAGGAGAAGAGAA
AAAATAGAGATGCCAACCGTGATTCCAGTGTGTTATTGTGG