JESPR0251, JESPR0251 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	JESPR0251
Alias	JESPR251
Genbank ID	AF351489
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	AF351489.1
Source Type	genomic
Repeat Motif	(CA)15
Primer 1	JESPR0251_F: CAACTAGAATGATAAGACAC
Primer 2	JESPR0251_R: CTTTAAGTACGTATGCATC
Polymorphism	P_ JESPR0251
Publication	[view all]
Comment	Primer data obtained in 2002

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AF351489

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr07	chromosome	Chr07:17071064..17071602 -

Publications


Year	Publication
2001	Reddy O, Pepper A, Abdurakhmonov I, Saha S, Jenkins J, Brooks T, Bolek Y, El-Zik K. New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. Journal of cotton science. 2001; 5(2):103-113

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AF351489.1	AF351489.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Deltapine-61 x Texas-701, F2 (2007)	AD_ch21_Dt.11	N/A	45.1	JESPR251-72	View
2	Emian-22 x 3-79, BC1 (2011)	AD_ch21_Dt.11	N/A	127.31	JESPR251	View
3	Guazuncho-2 x VH8-4602, RIL (2009)	AD_ch21_Dt.11	N/A	80.41	JESPR251	View
4	Handan-208 x Pima-90, F2:3 (2007)	AD_ch21_Dt.11	N/A	118.9	JESPR251	View
5	Yumian-1 x T586, F2:3 (2005)	AD_ch05_At.05	N/A	13	JESPR251	View
6	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch21_Dt.11	N/A	98.41	JESPR251	View
7	TM-1 x 3-79, RIL (2012)	AD_ch21_Dt.11	N/A	79.66	JESPR251	View
8	Yumian-1 x T586, F2:7 (2008)	AD_ch21_Dt.11	N/A	84.4	JESPR251	View
9	Yumian-1 x T586, RIL (2006)	AD_ch21_Dt.11	N/A	59.1	JESPR251	View
10	(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)	AD_ch21_Dt.11	N/A	140.4	JESPR251	View
11	Yumian-1 x T586, F2:3 (2005.v0)	AD_ch05_At.05	N/A	13	JESPR251	View
12	Yumian-1 x T586, RIL (2015)	AD_ch21_Dt.11	N/A	111.9	JESPR251	View
13	TM-1 x 3-79, RIL (2014)	AD_ch21_Dt.11	N/A	79.6	JESPR251	View
14	GX1135 x VGX100-2, RIL (2016)	AD_ch21_Dt.11	N/A	57.2	JESPR251	View
15	CCRI-35 x Yumian-1, RIL (2015)	AD_ch21_Dt.11	N/A	171.8	JESPR251	View
16	Monsanto SSR Bin Map, (2009)	AD_ch21_Dt.11	N/A	81	JESPR251	View
17	Emian-22 x 3-79, BC1 (2012)	AD_ch21_Dt.11	N/A	126.4	JESPR251	View
18	HS-46 x MARCABUCAG8US-1-88, RIL (2009)	AD_ch21_Dt.11	N/A	2	JESPR251-84	View
19	AD-genome wide Reference Map (2009)	AD_ch21_Dt.11	N/A	186	jespr0251	View
20	TM-1 x Hai-7124, BC1 (2007)	AD_ch21_Dt.11	N/A	105.2	JESPR251-110	View
21	TM-1 x Hai-7124, BC1 (2008)	AD_ch21_Dt.11	N/A	98	JESPR251-110	View
22	TM-1 x Hai-7124, BC1 (2012)	AD_ch21_Dt.11	N/A	80.9	JESPR251-110	View
23	Yumian-1 x T586, RIL (2009)	AD_ch21_Dt.11	N/A	85.1	JESPR251/190t(C21)	View
24	GB713 x Nem-X, F2 (2011)	AD_ch21_Dt.11	N/A	118.9	JESPR251_66	View
25	GX1135 x GX100-2, F2 (2013)	AD_ch11_At.11	N/A	39.1	JESP251	View
26	CCRI-35 x Yumian-1, RIL (2017)	AD_ch21_Dt.11	N/A	66.03	JESPR251	View
27	TM-1 x 3-79, RIL (2012.v3)	AD_ch21_Dt.11	N/A	79.59	JESPR251	View

Sequence

>JESPR0251 ID=JESPR0251; Name=JESPR0251; organism=Gossypium hirsutum; type=genetic_marker; length=90bp
CAACTAGAATGATAAGACACACACACACACACACACACACACACACACAA
TATTTATATCATCTATATATCGATGCATACGTACTTAAAG

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JESPR0251, JESPR0251 (genetic_marker) Gossypium hirsutum