HAU2138, HAU2138 (genetic_marker) gossypium spp

Marker Overview
NameHAU2138
Genbank IDEV497149
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GAA)7
PCR ConditionAnnealing temperature: 55.8
Primer 1HAU2138_F: TGGGAGTAGAAGGCACTTGGA
Primer 2HAU2138_R: ACGCCGGAGAGGACCTTCTT
Product Length150
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEV486129
DB:genbankEV482077
DB:genbankEV491289
DB:genbankEV497149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:59538276..59538426 +
A01chromosomeA01:96928878..96929028 -
CM018215.1chromosomeCM018215.1:58196348..58196498 +
CM018202.1chromosomeCM018202.1:106092010..106092163 -
D5_01chromosomeD5_01:51547783..51547933 -
KI_01chromosomeKI_01:34162099..34162252 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:92122333..92122483 -
D10_01chromosomeD10_01:5407970..5408120 +
CM016614.1chromosomeCM016614.1:128865094..128865247 -
Dt_chr2chromosomeDt_chr2:9041754..9041904 -
At_chr8chromosomeAt_chr8:22372230..22372380 -
D01chromosomeD01:56785996..56786146 +
A01chromosomeA01:92967481..92967631 -
Ghir_D01chromosomeGhir_D01:58456729..58456879 +
Ghir_A01chromosomeGhir_A01:110489255..110489405 -
D01chromosomeD01:60074482..60074632 +
A01chromosomeA01:111159622..111159772 -
D01chromosomeD01:59869826..59869976 +
A01chromosomeA01:108784972..108785122 -
D01chromosomeD01:57106301..57106451 +
A01chromosomeA01:105557447..105557600 -
Dt01chromosomeDt01:57558033..57558183 +
Dt01chromosomeDt01:57556882..57557032 +
scaffold2395supercontigscaffold2395:125109..125259 +
scaffold2395supercontigscaffold2395:126484..126637 +
scaffold20973supercontigscaffold20973:17274..17424 +
scaffold20973supercontigscaffold20973:16123..16273 +
Gbar_D01chromosomeGbar_D01:58418966..58419116 +
Gbar_A01chromosomeGbar_A01:108533481..108533634 -
D01chromosomeD01:59072372..59072522 +
A01chromosomeA01:108491401..108491554 -
CM017623.1chromosomeCM017623.1:59172855..59173005 +
CM017610.1chromosomeCM017610.1:107123231..107123381 -
CM017649.1chromosomeCM017649.1:59732900..59733050 -
CM017636.1chromosomeCM017636.1:114506669..114506819 -
CM017701.1chromosomeCM017701.1:57817168..57817318 -
CM017688.1chromosomeCM017688.1:104624134..104624287 -
D01chromosomeD01:60356291..60356441 +
A01chromosomeA01:112340935..112341085 -
A01chromosomeA01:112320754..112320904 -
Chr01chromosomeChr01:115722421..115722571 -
Chr02chromosomeChr02:7260134..7260284 +
Chr01chromosomeChr01:46939353..46939503 -
B_01chromosomeB_01:91124103..91124253 -
Chr02chromosomeChr02:55589113..55589263 -
chr02chromosomechr02:42527045..42527195 -
Chr_02chromosomeChr_02:37821018..37821168 -
Chr02chromosomeChr02:56499429..56499579 -
Chr02chromosomeChr02:40940199..40940352 -
Chr02chromosomeChr02:32431955..32432105 -
Chr02chromosomeChr02:39452138..39452288 -
E01chromosomeE01:108847569..108847719 -
F01chromosomeF01:92650992..92651142 -
Chr01chromosomeChr01:11248441..11248597 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch01_At.01N/A70.41HAU2138View
2(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A51.6HAU2138View
3Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A64.6HAU2138View
4Yumian-1 x 7235, RIL (2015)AD_ch15_Dt.01N/A95.3HAU2138View
5DH962 X Ji Mian 5, F2 (2015)AD_ch07_At.07N/A85.43HAU2138View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A61.7HAU2138View
7CCRI-35 x Yumian-1, RIL (2015)AD_ch01_At.01N/A101.6HAU2138View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch01_At.01N/A54.03HAU2138View
Sequence
>HAU2138 ID=HAU2138; Name=HAU2138; organism=Gossypium spp.; type=genetic_marker; length=150bp
TGGGAGTAGAAGGCACTTGGAATACATCTCTGATTTGCTTAGCAGCGTGA
AGAAGAAGAAGAAGAAGAAGCAAATTCAAACTGTAGCTCTCAAAATCAGG
ATGGATTGTGAAGGTTGTGCTCGTAAGGTCAAGAAGGTCCTCTCCGGCGT