HAU1571, HAU1571 (genetic_marker) gossypium spp

Marker Overview
NameHAU1571
AliasTA44773_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TTG)7
PCR ConditionAnnealing temperature: 56.6
Primer 1HAU1571_F: TGTAGCTCTGTTCCATCACC
Primer 2HAU1571_R: CATCGTTATCGCTCTCCTTT
Product Length250
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:59838565..59838814 +
A12chromosomeA12:98722038..98722284 -
CM018226.1chromosomeCM018226.1:56063728..56063977 +
CM018213.1chromosomeCM018213.1:95715115..95715361 +
D5_12chromosomeD5_12:3616811..3617069 -
KI_12chromosomeKI_12:3172170..3172434 -
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:3884815..3885061 -
D10_12chromosomeD10_12:51066532..51066801 +
CM016625.1chromosomeCM016625.1:4905376..4905616 -
Dt_chr8chromosomeDt_chr8:53094671..53094923 +
scaffold4587_D12supercontigscaffold4587_D12:27837..28086 +
scaffold3405_A12supercontigscaffold3405_A12:162958..163204 +
Ghir_D12chromosomeGhir_D12:58704140..58704389 +
Ghir_A12chromosomeGhir_A12:103539977..103540223 +
D12chromosomeD12:57923663..57923912 +
A12chromosomeA12:103707428..103707674 +
D12chromosomeD12:58781801..58782053 +
A12chromosomeA12:101697344..101697590 +
D12chromosomeD12:56844715..56844964 +
A12chromosomeA12:98613731..98613977 +
Dt12chromosomeDt12:59385675..59385921 +
scaffold7032supercontigscaffold7032:3687..3933 +
scaffold5383supercontigscaffold5383:114903..115152 -
Scaffold1035supercontigScaffold1035:41360..41609 +
Gbar_A12chromosomeGbar_A12:98229699..98229945 +
D12chromosomeD12:57060032..57060281 +
A12chromosomeA12:97784380..97784626 +
CM017634.1chromosomeCM017634.1:56879810..56880065 +
CM017621.1chromosomeCM017621.1:98923110..98923356 +
CM017660.1chromosomeCM017660.1:59832159..59832408 +
CM017647.1chromosomeCM017647.1:102727473..102727719 +
CM017712.1chromosomeCM017712.1:57485668..57485917 +
CM017699.1chromosomeCM017699.1:98106225..98106471 +
D12chromosomeD12:59181101..59181350 +
A12chromosomeA12:105259337..105259583 +
Chr12chromosomeChr12:106316299..106316545 +
Chr12chromosomeChr12:113366142..113366388 +
Chr12chromosomeChr12:54119728..54119986 +
B_12chromosomeB_12:86847784..86848027 -
Chr08chromosomeChr08:54521567..54521813 +
chr08chromosomechr08:42300845..42301094 +
Chr_08chromosomeChr_08:40226463..40226732 +
Chr08chromosomeChr08:56062997..56063246 +
Chr08chromosomeChr08:39284694..39284943 +
Chr08chromosomeChr08:30708574..30708820 +
Chr08chromosomeChr08:37638028..37638274 +
E12chromosomeE12:109837699..109837948 +
F12chromosomeF12:87765058..87765304 +
Chr12chromosomeChr12:168969399..168969660 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch26_Dt.12N/A52.5HAU1571View
2DH962 X Ji Mian 5, F2 (2015)AD_ch26_Dt.12N/A10.62HAU1571View
3GX1135 x GX100-2, F2 (2013)AD_ch26_Dt.12N/A167.4HAU1571View
4GX1135 x GX100-2, RIL (2015)AD_ch26_Dt.12N/A1.7HAU1571View
5GX1135 x GX100-2, RIL (2016)AD_ch26_Dt.12N/A1.7HAU1571View
6GX1135 x VGX100-2, RIL (2016)AD_ch26_Dt.12N/A11.5HAU1571View
7DH962 x Ji Mian 5, RIL (2015)AD_ch26_Dt.12N/A7.9HAU1571View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A40.9HAU1571View
Sequence
>HAU1571 ID=HAU1571; Name=HAU1571; organism=Gossypium spp.; type=genetic_marker; length=250bp
TGTAGCTCTGTTCCATCACCTTGTTGTTGTTGTTGTTGTTGTAACTTAGA
GAAGAACAAAAAGAATGGGTGACTCTGATACTAGAAAGGTTAGGAATATA
TGCATATTAGCGCATGTTGATCATGGTAAAACCACGTTGGCTGATCATTT
AATTGCCGCCACAGGTGGTGGCGTGCTTCACCCTAAATTAGCTGGTAAAC
TTAGGTTTATGGATTATCTTGATGAAGAACAAAGGAGAGCGATAACGATG