HAU1459, HAU1459 (genetic_marker) gossypium spp

Marker Overview
NameHAU1459
AliasTA39611_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CT)7
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU1459_F: GTTCAACTCGGTTCGTCAA
Primer 2HAU1459_R: AAATTGGATCAGCATCACCT
Product Length293
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A12chromosomeA12:101382553..101382845 -
CM018226.1chromosomeCM018226.1:58414920..58415245 -
D5_12chromosomeD5_12:1359912..1360210 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:1435740..1436031 +
D10_12chromosomeD10_12:53292260..53292550 -
CM016625.1chromosomeCM016625.1:1834853..1835144 +
A12chromosomeA12:86128558..86128850 -
Ghir_A12chromosomeGhir_A12:106063441..106063733 -
A12chromosomeA12:106095232..106095524 -
A12chromosomeA12:104206799..104207091 -
A12chromosomeA12:101135278..101135570 -
Dt12chromosomeDt12:61825359..61825680 -
Dt12chromosomeDt12:61811667..61811988 -
scaffold10878supercontigscaffold10878:169726..170047 -
scaffold10878supercontigscaffold10878:156034..156355 -
Gbar_D12chromosomeGbar_D12:57645989..57646308 -
CM017621.1chromosomeCM017621.1:101350756..101351048 -
CM017660.1chromosomeCM017660.1:62407549..62407849 -
CM017647.1chromosomeCM017647.1:105230994..105231286 -
CM017712.1chromosomeCM017712.1:59964151..59964474 -
A12chromosomeA12:107799931..107800223 -
Chr12chromosomeChr12:108805491..108805783 -
Chr12chromosomeChr12:115798688..115798979 -
Chr12chromosomeChr12:56378841..56379140 -
B_12chromosomeB_12:84430822..84431113 +
Chr08chromosomeChr08:56815380..56815676 -
chr08chromosomechr08:44439908..44440372 -
Chr_08chromosomeChr_08:41998236..41998661 -
Chr08chromosomeChr08:58392112..58392415 -
Chr08chromosomeChr08:41156120..41156416 -
Chr08chromosomeChr08:32453418..32453712 -
Chr08chromosomeChr08:39796454..39796749 -
E12chromosomeE12:112993339..112993627 -
F12chromosomeF12:89969101..89969400 -
Chr12chromosomeChr12:172792473..172792766 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch20_Dt.10N/A103.6HAU1459bView
2Yumian-1 x 7235, RIL (2015)AD_ch26_Dt.12N/A8HAU1459View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch26_Dt.12N/A15.9HAU1459View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch26_Dt.12N/A153.69HAU1459View
Sequence
>HAU1459 ID=HAU1459; Name=HAU1459; organism=Gossypium spp.; type=genetic_marker; length=293bp
GTTCAACTCGGTTCGTCAAAACGAACTCTCTCTCTCTCTTTCTATATTTA
TATTATCTTTTCGATTCTATGGGACGGAATCCACCACTTCATCTCTGGAA
CCTCAATCAACAATCGCTTATTCTGTGGTTAAAAAAACGTCGAATCATTC
TTTTTTTTCTCTCTCTTTTCTCTGTTTACTTTTCTTTTGGCCTATGAATC
AAATGGCTCCTTGCCGTTTAATTCTGCTCATTATCGTACTTTCCTTTCTC
GTATCGTCACTTAACGCCAGCGAAGGTGATGCTGATCCAATTT