HAU1417, HAU1417 (genetic_marker) gossypium spp

Marker Overview
NameHAU1417
AliasTA37350_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CAT)7
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU1417_F: CAAAACTTGTTGCTCTTCCA
Primer 2HAU1417_R: TAACTGAAACCCCAAAAGGA
Product Length150
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:62358588..62358733 -
A01chromosomeA01:101812763..101812912 -
CM018202.1chromosomeCM018202.1:111044446..111044595 -
D5_01chromosomeD5_01:54713699..54713843 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:97339460..97339603 -
D10_01chromosomeD10_01:1840638..1840784 +
CM016614.1chromosomeCM016614.1:134938343..134938492 -
D01chromosomeD01:59485062..59485207 -
A01chromosomeA01:97848350..97848499 -
Ghir_D01chromosomeGhir_D01:61204365..61204510 -
Ghir_A01chromosomeGhir_A01:115528767..115528916 -
D01chromosomeD01:62681514..62681659 -
A01chromosomeA01:115997392..115997541 -
A01chromosomeA01:113833386..113833535 -
A01chromosomeA01:110625044..110625193 -
scaffold11677supercontigscaffold11677:122967..123116 +
Gbar_A01chromosomeGbar_A01:113524459..113524608 -
A01chromosomeA01:113521027..113521176 -
CM017610.1chromosomeCM017610.1:112039425..112039574 -
CM017649.1chromosomeCM017649.1:63485486..63485631 -
CM017636.1chromosomeCM017636.1:119584318..119584467 -
CM017688.1chromosomeCM017688.1:109689842..109689991 -
D01chromosomeD01:63104350..63104495 -
A01chromosomeA01:117481980..117482129 -
Chr01chromosomeChr01:120804888..120805031 -
Chr02chromosomeChr02:2101287..2101430 +
Chr01chromosomeChr01:50520337..50520481 -
B_01chromosomeB_01:96023421..96023570 -
Chr02chromosomeChr02:59424279..59424425 -
chr02chromosomechr02:45628663..45628809 -
Chr_02chromosomeChr_02:40400560..40400706 -
Chr02chromosomeChr02:60289715..60289861 -
Chr02chromosomeChr02:44059722..44059868 -
Chr02chromosomeChr02:34726679..34726825 -
Chr02chromosomeChr02:42535341..42535487 -
E01chromosomeE01:114535413..114535556 -
F01chromosomeF01:96553920..96554069 -
Chr01chromosomeChr01:2333008..2333148 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch01_At.01N/A123.9HAU1417bView
2GX1135 x GX100-2, F2 (2013)AD_ch17_Dt.03N/A19HAU1417aView
3GX1135 x GX100-2, RIL (2016)AD_ch01_At.01N/A165.5HAU1417View
Sequence
>HAU1417 ID=HAU1417; Name=HAU1417; organism=Gossypium spp.; type=genetic_marker; length=150bp
CAAAACTTGTTGCTCTTCCATTAAAACATCATCATCATCATCATCATCCA
TGAGAGTAGTATTATTATCAGTGGTGATACCATTGATTTTGCTTACAAGC
TTTCTATCTTTTTCATTAGTTTCAAAAAGGTCCTTTTGGGGTTTCAGTTA