HAU1332, HAU1332 (genetic_marker) gossypium spp

Marker Overview
NameHAU1332
AliasTA34557_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AT)7
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU1332_F: TTGGCATTGAGTACGCTTTA
Primer 2HAU1332_R: TTGCTTCATTCGTAGTGCAT
Product Length230
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A04chromosomeA04:30726573..30726804 +
D04chromosomeD04:25579962..25580194 -
CM018205.1chromosomeCM018205.1:29442315..29442540 +
tig00001204_CRI-A2_v1.0.a1chromosometig00001204_CRI-A2_v1.0.a1:152606..152831 +
D10_04chromosomeD10_04:21572783..21573013 -
CM016617.1chromosomeCM016617.1:69576128..69576360 -
Dt_chr12chromosomeDt_chr12:19965897..19966129 -
scaffold913_A04supercontigscaffold913_A04:593189..593420 -
D04chromosomeD04:22555512..22555744 -
Ghir_A04chromosomeGhir_A04:31438027..31438256 +
Ghir_D04chromosomeGhir_D04:22956356..22956588 -
A04chromosomeA04:31059690..31059921 +
D04chromosomeD04:22655971..22656203 -
A04chromosomeA04:30248238..30248469 +
D04chromosomeD04:22661397..22661627 -
A04chromosomeA04:29364411..29364640 +
D04chromosomeD04:22225977..22226209 -
scaffold7695supercontigscaffold7695:46054..46279 -
scaffold7695supercontigscaffold7695:39577..39802 -
Gbar_A04chromosomeGbar_A04:29131782..29132007 +
A04chromosomeA04:29296352..29296577 +
CM017613.1chromosomeCM017613.1:30713352..30713579 +
CM017626.1chromosomeCM017626.1:22062092..22062318 -
CM017639.1chromosomeCM017639.1:34486366..34486591 +
CM017691.1chromosomeCM017691.1:29284165..29284390 +
A04chromosomeA04:32289465..32289696 +
D04chromosomeD04:23388280..23388512 -
Chr04chromosomeChr04:56016326..56016551 +
Chr12chromosomeChr12:21953838..21954068 -
Chr_12chromosomeChr_12:14277349..14277579 -
Chr12chromosomeChr12:21705774..21706010 -
Chr12chromosomeChr12:16901102..16901330 -
Chr12chromosomeChr12:16088165..16088393 -
E04chromosomeE04:41362841..41363072 -
F04chromosomeF04:42030705..42030930 +
Chr04chromosomeChr04:71161337..71161564 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch04_At.04N/A89.06HAU1332View
2Yumian-1 x 7235, RIL (2015)AD_ch04_At.04N/A15.9HAU1332View
3GX1135 x GX100-2, F2 (2013)AD_ch04_At.04N/A44.7HAU1332View
4GX1135 x GX100-2, RIL (2016)AD_ch04_At.04N/A36.7HAU1332View
Sequence
>HAU1332 ID=HAU1332; Name=HAU1332; organism=Gossypium spp.; type=genetic_marker; length=230bp
TTGGCATTGAGTACGCTTTACCCGAGCACGTTAACGCCTTGTGGAGATTT
GCCATTGCCGGTTCCGCATGGATAAGTGCTCCTAAAAATACTCTCAGGCT
TTCCTAGGCTCTTTATAATACATGAACTTGTTTTGATATGAATTGTTTTT
TATCACTTCTTTTTCCTTCTGTCGTTCTAGGAAAATGTGATATATATATA
TATGAATTCAATGCACTACGAATGAAGCAA