HAU1044, HAU1044 (genetic_marker) gossypium spp

Marker Overview
NameHAU1044
AliasTA24686_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CGG)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU1044_F: TGGTCTGTATCCGTTCATTG
Primer 2HAU1044_R: TTTTCGTATTTGTGGTGGTG
Product Length193
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:604331..604520 -
D01chromosomeD01:521327..521519 -
Ghir_D01chromosomeGhir_D01:580928..581120 -
D01chromosomeD01:566666..566849 -
D01chromosomeD01:546116..546308 -
D01chromosomeD01:537889..538081 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A14.3HAU1044View
2Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A1.9HAU1044View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch15_Dt.01N/A33.5HAU1044View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch15_Dt.01N/A5.64HAU1044View
Sequence
>HAU1044 ID=HAU1044; Name=HAU1044; organism=Gossypium spp.; type=genetic_marker; length=193bp
TGGTCTGTATCCGTTCATTGGGACTAACAGGGAAACGTTAGAGATCATTA
TCGGCGGCGGCGGCGGTGAAGCTCCTGCTCCGTCGCCTGAAGATTGTCCT
CCTCCGCCACCTGAACCTGAATGTCCACCTCCAGCATCTCCACCACCACC
ACCACCACCACCACCACCACCACCACCACCACAAATACGAAAA