HAU0883, HAU0883 (genetic_marker) gossypium spp

Marker Overview
NameHAU0883
AliasTA20430_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AT)9
PCR ConditionAnnealing temperature: 56.5
Primer 1HAU0883_F: TAGAGCTGCTGCTATCAAGG
Primer 2HAU0883_R: AAATGATCCCAAGGAACAAA
Product Length120
PolymorphismP_ HAU0883
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:69785741..69785860 +
A03chromosomeA03:107686685..107686798 +
CM018216.1chromosomeCM018216.1:65966404..65966517 +
CM018204.1chromosomeCM018204.1:105027315..105027430 +
D5_03chromosomeD5_03:947387..947512 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:134623129..134623253 +
D10_03chromosomeD10_03:880811..880924 -
CM016624.1chromosomeCM016624.1:57297..57414 -
scaffold190.1supercontigscaffold190.1:266895..267008 -
Dt_chr5chromosomeDt_chr5:7340293..7340412 -
D02chromosomeD02:66371150..66371269 +
A03chromosomeA03:99227984..99228097 +
Ghir_D02chromosomeGhir_D02:68847561..68847680 +
Ghir_A03chromosomeGhir_A03:111979617..111979730 +
D02chromosomeD02:68853558..68853677 +
A03chromosomeA03:110583768..110583881 +
D02chromosomeD02:70183405..70183522 +
A03chromosomeA03:109085799..109085912 +
D02chromosomeD02:67299221..67299340 +
A03chromosomeA03:104360009..104360122 +
scaffold39465supercontigscaffold39465:27672..27787 -
scaffold39465supercontigscaffold39465:23086..23201 -
scaffold39465supercontigscaffold39465:20239..20354 -
scaffold10802supercontigscaffold10802:246745..246858 -
scaffold10802supercontigscaffold10802:242905..243018 -
Gbar_D02chromosomeGbar_D02:66710623..66710736 +
Gbar_A03chromosomeGbar_A03:104237915..104238030 +
D02chromosomeD02:67913761..67913874 +
A03chromosomeA03:106573215..106573330 +
CM017624.1chromosomeCM017624.1:68944387..68944502 +
CM017612.1chromosomeCM017612.1:105918451..105918568 +
CM017650.1chromosomeCM017650.1:70595876..70595989 +
CM017638.1chromosomeCM017638.1:113077473..113077590 +
CM017702.1chromosomeCM017702.1:67507187..67507300 +
CM017690.1chromosomeCM017690.1:107047314..107047431 +
D02chromosomeD02:71265926..71266045 +
A03chromosomeA03:112674538..112674651 +
Chr03chromosomeChr03:930413..930530 -
Chr03chromosomeChr03:1083471..1083595 -
Chr03chromosomeChr03:62129050..62129177 +
B_03chromosomeB_03:1115681..1115802 -
Chr05chromosomeChr05:65169968..65170089 +
Chr_05chromosomeChr_05:42905171..42905284 +
Chr05chromosomeChr05:66664388..66664515 +
Chr05chromosomeChr05:43925717..43925830 +
E03chromosomeE03:124631815..124631940 +
F03chromosomeF03:109314597..109314720 +
Chr03chromosomeChr03:1099162..1099273 -
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch03_At.03N/A155.51HAU0883aView
2Emian-22 x 3-79, BC1 (2011)AD_ch14_Dt.02N/A58.45HAU0883bView
3Yumian-1 x T586, RIL (2015)AD_ch14_Dt.02N/A145.5HAU0883View
4GX1135 x VGX100-2, RIL (2016)AD_ch14_Dt.02N/A0HAU0883View
5CCRI-36 x G2005, RIL (2016)AD_ch03_At.03N/A0HAU0883View
6901-001 x sGK156, F2 (2019)AD_ch03_At.03N/A5.36HAU0883View
Sequence
>HAU0883 ID=HAU0883; Name=HAU0883; organism=Gossypium spp.; type=genetic_marker; length=120bp
TAGAGCTGCTGCTATCAAGGCTTTGGGGTCCTTCCGCAGTAACCCTACCA
ACTAAAGAAGAGAATATATATATATATATACACACATAGCTTTGTCTCCA
TTTGTTCCTTGGGATCATTT