HAU0086, HAU0086 (genetic_marker) Gossypium barbadense

Marker Overview


Name	HAU0086
Alias	HAU086
Genbank ID	EE592883
Type	SSR
Species	Gossypium barbadense
Germplasm	3-79
Source Type	EST
Repeat Motif	(TA)7
Primer 1	HAU0086_F: GTTCGGGATTTCATCAAGC
Primer 2	HAU0086_R: AACAAAACATGTGTGCATGG
Product Length	200
Publication	[view all]
Contact	Zhang, Xian-Long
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Xian-Long

Description:	Genomics breeding
First name:	Xian-Long
Last name:	Zhang
Title:	Professor
Institution:	College of Plant Science and Technology, Huazhong Agricultural University
Address:	#1 Shizishan, Wuhan, Hubei 430070
Country:	China
Email:	xlzhang@mail.hzau.edu.cn
Phone:	+86 27 87280510
Fax:	+86 27 87280016
Last update:	12-Jun-2009

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	EE592883

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A04	chromosome	A04:79236292..79236489 +
CM018205.1	chromosome	CM018205.1:77706779..77706978 +
Chr04_CRI-A2_v1.0.a1	chromosome	Chr04_CRI-A2_v1.0.a1:3888216..3888419 -
Dt_chr8	chromosome	Dt_chr8:2358750..2358947 -
scaffold34072	supercontig	scaffold34072:509..706 -
Ghir_A04	chromosome	Ghir_A04:81693373..81693570 +
A04	chromosome	A04:84443240..84443437 +
A04	chromosome	A04:81942152..81942349 +
A04	chromosome	A04:77613935..77614134 +
At04	chromosome	At04:62877820..62878019 +
scaffold9660	supercontig	scaffold9660:91145..91344 +
Gbar_A04	chromosome	Gbar_A04:78183320..78183519 +
A04	chromosome	A04:78601745..78601944 +
CM017613.1	chromosome	CM017613.1:80227337..80227534 +
CM017639.1	chromosome	CM017639.1:88727770..88727970 +
CM017691.1	chromosome	CM017691.1:78674124..78674325 +
A04	chromosome	A04:85683084..85683281 +
Chr04	chromosome	Chr04:105638497..105638698 +
Chr04	chromosome	Chr04:107397737..107397942 +
B_02	chromosome	B_02:3820666..3820864 -
Chr12	chromosome	Chr12:24159699..24159896 +
F04	chromosome	F04:88119659..88119860 +
Chr04	chromosome	Chr04:173857319..173857516 +

Publications


Year	Publication
2007	Tu LL, Zhang XL, Liang SG, Liu DQ, Zhu LF, Zeng FC, Nie YC, Guo XP, Deng FL, Tan JF, Xu L. Genes expression analyses of sea-island cotton (Gossypium barbadense L.) during fiber development. Plant cell reports. 2007 Aug; 26(8):1309-20

Germplasm


Stock Name	Type
3-79	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Emian-22 x 3-79, BC1 (2011)	AD_ch04_At.04	N/A	53.77	HAU0086b	View
2	Yumian-1 x T586, RIL (2015)	AD_ch22_Dt.04	N/A	69	HAU0086b	View
3	Yumian-1 x 7235, RIL (2015)	AD_ch22_Dt.04	N/A	74.2	HAU0086b	View
4	Emian-22 x 3-79, BC1 (2011)	AD_ch22_Dt.04	N/A	60.01	HAU086a	View
5	TM-1 x 3-79, RIL (2012)	AD_ch04_At.04	N/A	75.53	HAU086a	View
6	Yumian-1 x T586, RIL (2006)	AD_ch04_At.04	N/A	42.8	HAU086a	View
7	TM-1 x 3-79, RIL (2014)	AD_ch04_At.04	N/A	76.3	HAU086a	View
8	AD-genome wide Reference Map (2009)	AD_ch04_At.04	N/A	9	hau0086	View
9	TM-1 x 3-79, RIL (2012)	AD_ch22_Dt.04	N/A	49.1	HAU086b	View
10	Yumian-1 x T586, RIL (2006)	AD_ch04_At.04	N/A	0	HAU086b	View
11	TM-1 x 3-79, RIL (2014)	AD_ch22_Dt.04	N/A	82.1	HAU086b	View
12	Yumian-1 x T586, RIL (2009)	AD_ch04_At.04	N/A	36.9	HAU086/200y	View
13	Yumian-1 x T586, RIL (2015)	AD_ch04_At.04	N/A	60.7	HAU0086a	View
14	Yumian-1 x 7235, RIL (2015)	AD_ch04_At.04	N/A	51	HAU0086a	View
15	Emian-22 x 3-79, BC1 (2015)	AD_ch22_Dt.04	N/A	59.7	HAU0086a	View
16	TM-1 x 3-79, RIL (2012.v3)	AD_ch04_At.04	N/A	76.23	HAU086a	View
17	TM-1 x 3-79, RIL (2012.v3)	AD_ch22_Dt.04	N/A	82.07	HAU086b	View

Sequence

>HAU0086 ID=HAU0086; Name=HAU0086; organism=Gossypium barbadense; type=genetic_marker; length=200bp
GTTCGGGATTTCATCAAGCTTAAAGATCGAGGACGAAGAGGCTATATATA
TATATATGCATGCTGATGGTGTTATTATAAAAATAAACTGTTTTATTGCT
GTTGTTTTCCTTTGGGTTTTTGTTTTGGTAGTGTTGAATAAAATTTCCCT
TATATTTTCCCATCACGGCCGTGTCCACCGCCATGCACACATGTTTTGTT

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HAU0086, HAU0086 (genetic_marker) Gossypium barbadense