HAU0042, HAU0042 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0042
AliasHAU042
Genbank IDEE592528
TypeSSR
SpeciesGossypium barbadense
Germplasm3-79
Source TypeEST
Repeat Motif(AC)12
Primer 1HAU0042_F: AATTTGGAGTGCAAGAGAGC
Primer 2HAU0042_R: AAGGGAAACAACAAACAAGG
Product Length223
PolymorphismP_ HAU0042
Publication[view all]
ContactZhang, Xian-Long
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEE592528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:94530480..94530697 +
D04chromosomeD04:5500699..5500911 -
CM018206.1chromosomeCM018206.1:96944743..96944966 +
CM018218.1chromosomeCM018218.1:4978649..4978861 -
D5_04chromosomeD5_04:45286733..45286945 +
KI_06chromosomeKI_06:46498335..46498556 -
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:92445978..92446150 +
D10_04chromosomeD10_04:4823244..4823456 -
CM016617.1chromosomeCM016617.1:7943009..7943218 -
At_chr9chromosomeAt_chr9:59940145..59940362 +
At_chr9chromosomeAt_chr9:62527317..62527529 +
A05chromosomeA05:86280608..86280825 +
D04chromosomeD04:4751380..4751592 -
Ghir_A05chromosomeGhir_A05:103382006..103382223 +
Ghir_D04chromosomeGhir_D04:5414410..5414622 -
A05chromosomeA05:104991812..104992029 +
D04chromosomeD04:5338344..5338556 -
A05chromosomeA05:103484434..103484651 +
D04chromosomeD04:5281867..5282079 -
A05chromosomeA05:101421568..101421785 +
D04chromosomeD04:5022738..5022950 -
scaffold19762supercontigscaffold19762:35115..35327 +
scaffold5348supercontigscaffold5348:1802..2025 -
Gbar_A05chromosomeGbar_A05:96962055..96962278 +
Gbar_D04chromosomeGbar_D04:4968926..4969138 -
A05chromosomeA05:101913209..101913432 +
D04chromosomeD04:4946944..4947156 -
CM017614.1chromosomeCM017614.1:99226520..99226737 +
CM017626.1chromosomeCM017626.1:5088986..5089198 -
CM017640.1chromosomeCM017640.1:107641588..107641811 +
CM017652.1chromosomeCM017652.1:5236943..5237155 -
CM017692.1chromosomeCM017692.1:99835772..99835995 +
CM017704.1chromosomeCM017704.1:5241172..5241384 -
A05chromosomeA05:105178144..105178361 +
D04chromosomeD04:5776191..5776403 -
Chr04chromosomeChr04:6316162..6316393 -
Chr04chromosomeChr04:6128939..6129111 -
Chr04chromosomeChr04:45717939..45718151 +
Chr12chromosomeChr12:5267723..5267935 -
chr12chromosomechr12:4799292..4799504 -
Chr_12chromosomeChr_12:3627179..3627391 -
Chr12chromosomeChr12:4981934..4982146 -
Chr12chromosomeChr12:5127694..5127908 -
Chr12_3446115chromosomeChr12_3446115:8139..8351 -
Chr12chromosomeChr12:4822750..4822964 -
E04chromosomeE04:7773994..7774209 -
F04chromosomeF04:5149659..5149876 -
Chr04chromosomeChr04:7411360..7411571 -
Germplasm
Stock NameType
3-79accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A169.11HAU0042aView
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A293hau0042View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch05_At.05N/A59.6hau0042View
4TM-1 x 3-79, RIL (2012)AD_ch05_At.05N/A158.84HAU042View
5DH962 x Jinmian-6, F2 (2009)AD_ch05_At.05N/A0HAU042View
6DH962 x Jinmian-6, F2 (2009)AD_ch05_At.05N/A0HAU042View
7DH962 X Ji Mian 5, F2 (2015)AD_ch05_At.05N/A13.94HAU042View
8TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A39HAU042View
9DH962 x Ji Mian 5, RIL (2015)AD_ch05_At.05N/A0HAU042View
10CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A218.7HAU042View
11TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A39.01HAU042View
12MGG-293-793, MAGIC (2018)AD_ch02_At.02N/A208.2HAU0042aView
13MGG-293-793, MAGIC (2018)AD_ch05_At.05N/A208.2HAU0042aView
Sequence
>HAU0042 ID=HAU0042; Name=HAU0042; organism=Gossypium barbadense; type=genetic_marker; length=223bp
AATTTGGAGTGCAAGAGAGCAACATAAACTCACATGTGCACCTCCTCAGA
GGAATCCCCAATTTTGTGGAAACACTGCCTTCTGAACATAGCCTGACCTT
AGTATGGAAAGAGTTGAGGATGGAAGAATATATAAATAAATACACACACA
CACACACACACACACATATATATGTCTGTGACTTCATAATTTATTCCATG
CAGCCTTGTTTGTTGTTTCCCTT