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Marker Overview
Name | HAU0042 |
Alias | HAU042
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Genbank ID | EE592528 |
Type | SSR |
Species | Gossypium barbadense |
Germplasm | 3-79 |
Source Type | EST |
Repeat Motif | (AC)12 |
Primer 1 | HAU0042_F: AATTTGGAGTGCAAGAGAGC |
Primer 2 | HAU0042_R: AAGGGAAACAACAAACAAGG |
Product Length | 223 |
Polymorphism | P_ HAU0042 |
Publication | [view all] |
Contact | Zhang, Xian-Long
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Comment | Primer data obtained in 2007-05 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Publications
Year | Publication |
2007 | Tu LL, Zhang XL, Liang SG, Liu DQ, Zhu LF, Zeng FC, Nie YC, Guo XP, Deng FL, Tan JF, Xu L. Genes expression analyses of sea-island cotton (Gossypium barbadense L.) during fiber development. Plant cell reports. 2007 Aug; 26(8):1309-20 |
Germplasm
Stock Name | Type |
3-79 | accession |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Emian-22 x 3-79, BC1 (2011) | AD_ch05_At.05 | N/A | 169.11 | HAU0042a | View |
2 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 293 | hau0042 | View |
3 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch05_At.05 | N/A | 59.6 | hau0042 | View |
4 | TM-1 x 3-79, RIL (2012) | AD_ch05_At.05 | N/A | 158.84 | HAU042 | View |
5 | DH962 x Jinmian-6, F2 (2009) | AD_ch05_At.05 | N/A | 0 | HAU042 | View |
6 | DH962 x Jinmian-6, F2 (2009) | AD_ch05_At.05 | N/A | 0 | HAU042 | View |
7 | DH962 X Ji Mian 5, F2 (2015) | AD_ch05_At.05 | N/A | 13.94 | HAU042 | View |
8 | TM-1 x 3-79, RIL (2014) | AD_ch05_At.05 | N/A | 39 | HAU042 | View |
9 | DH962 x Ji Mian 5, RIL (2015) | AD_ch05_At.05 | N/A | 0 | HAU042 | View |
10 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch05_At.05 | N/A | 218.7 | HAU042 | View |
11 | TM-1 x 3-79, RIL (2012.v3) | AD_ch05_At.05 | N/A | 39.01 | HAU042 | View |
12 | MGG-293-793, MAGIC (2018) | AD_ch02_At.02 | N/A | 208.2 | HAU0042a | View |
13 | MGG-293-793, MAGIC (2018) | AD_ch05_At.05 | N/A | 208.2 | HAU0042a | View |
Sequence
>HAU0042 ID=HAU0042; Name=HAU0042; organism=Gossypium barbadense; type=genetic_marker; length=223bp AATTTGGAGTGCAAGAGAGCAACATAAACTCACATGTGCACCTCCTCAGA GGAATCCCCAATTTTGTGGAAACACTGCCTTCTGAACATAGCCTGACCTT AGTATGGAAAGAGTTGAGGATGGAAGAATATATAAATAAATACACACACA CACACACACACACACATATATATGTCTGTGACTTCATAATTTATTCCATG CAGCCTTGTTTGTTGTTTCCCTT
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