HAU0040, HAU0040 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0040
AliasHAU040
Genbank IDEE592510
TypeSSR
SpeciesGossypium barbadense
Germplasm3-79
Source TypeEST
Repeat Motif(GA)7
Primer 1HAU0040_F: ATCAGCCATTTGCTGTACG
Primer 2HAU0040_R: ACTCCCAACCAATTTACACC
Product Length212
Publication[view all]
ContactZhang, Xian-Long
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEE592510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:3208032..3208240 -
A02chromosomeA02:2491664..2491876 -
CM018216.1chromosomeCM018216.1:2548306..2548517 +
CM018203.1chromosomeCM018203.1:2520243..2520455 -
D5_03chromosomeD5_03:60754991..60755195 +
KI_03chromosomeKI_03:2198209..2198413 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:2813275..2813487 -
D10_03chromosomeD10_03:63786505..63786712 -
CM016616.1chromosomeCM016616.1:149725792..149726001 +
scaffold1051.1supercontigscaffold1051.1:60971..61179 +
At_chr8chromosomeAt_chr8:73454257..73454469 -
scaffold3779_D02supercontigscaffold3779_D02:9955..10163 +
scaffold196015supercontigscaffold196015:22..234 -
A02chromosomeA02:2392352..2392560 -
Ghir_D02chromosomeGhir_D02:3035409..3035617 -
Ghir_A02chromosomeGhir_A02:2540844..2541056 -
D02chromosomeD02:2820002..2820210 -
A02chromosomeA02:2460596..2460808 -
D02chromosomeD02:3099127..3099335 -
A02chromosomeA02:2661642..2661854 -
D02chromosomeD02:3041908..3042116 -
A02chromosomeA02:2559651..2559863 -
scaffold15268supercontigscaffold15268:115994..116205 -
Gbar_D02chromosomeGbar_D02:3394221..3394432 +
Gbar_A02chromosomeGbar_A02:2447535..2447747 -
D02chromosomeD02:2935080..2935292 -
A02chromosomeA02:2464202..2464414 -
CM017624.1chromosomeCM017624.1:3091210..3091420 -
CM017611.1chromosomeCM017611.1:2535519..2535731 -
CM017650.1chromosomeCM017650.1:3354837..3355047 -
CM017637.1chromosomeCM017637.1:2654961..2655173 -
CM017702.1chromosomeCM017702.1:2715143..2715354 -
CM017689.1chromosomeCM017689.1:2549815..2550027 -
D02chromosomeD02:3106874..3107082 -
A02chromosomeA02:2674126..2674338 -
Chr03chromosomeChr03:129795039..129795251 +
Chr03chromosomeChr03:128042166..128042378 +
Chr03chromosomeChr03:2772146..2772351 -
B_03chromosomeB_03:104346104..104346304 +
Chr05chromosomeChr05:3015619..3015828 -
chr05chromosomechr05:2358639..2358848 -
Chr05chromosomeChr05:3419713..3419922 -
Chr05chromosomeChr05:2020786..2021099 -
Chr05chromosomeChr05:2690072..2690281 -
E03chromosomeE03:4004881..4005096 -
Chr05chromosomeHAU0040:1..361 .
Chr05:2782563..2782917 -
scaffold337supercontigHAU0040:1..361 .
scaffold337:2057800..2058154 -
Germplasm
Stock NameType
3-79accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A6.3HAU0040View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A90.2HAU0040View
3Yumian-1 x T586, RIL (2006)AD_ch02_At.02N/A19.6HAU040View
4Yumian-1 x T586, RIL (2009)AD_ch02_At.02N/A15.4HAU040/280yView
5CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A19.59HAU0040View
Sequence
>HAU0040 ID=HAU0040; Name=HAU0040; organism=Gossypium barbadense; type=genetic_marker; length=212bp
ATCAGCCATTTGCTGTACGTTGCGAACAAGTTGCGCACACAAGCCATAGG
GTAAAAAAGCTTTTAGTAACCACGTATTTGTGTCGTGTTTTCGTCATTAG
TCCGTCCCCCTCCCCTCAAACCCCATTTGTTCTTTTATTTGAGAGAGAGA
GAGAAAAAAAAAAGCATTCAGTGCTTGTAATGTAAATTGGTGGGTGTAAA
TTGGTTGGGAGT