HAU0030, HAU0030 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0030
AliasHAU030
Genbank IDEE593197
TypeSSR
SpeciesGossypium barbadense
Germplasm3-79
Source TypeEST
Repeat Motif(AG)5
Primer 1HAU0030_F: CGAAGACAAAGAAACACAGAGC
Primer 2HAU0030_R: AGATCGCAAAAATGAAGAGC
Product Length165
Publication[view all]
ContactZhang, Xian-Long
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEE593197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:49883477..49883641 +
A13chromosomeA13:87654323..87654487 +
CM018227.1chromosomeCM018227.1:45955774..45955938 +
CM018214.1chromosomeCM018214.1:91792928..91793084 +
D5_13chromosomeD5_13:44725264..44725428 +
KI_13chromosomeKI_13:33698073..33698236 +
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:105831961..105832125 +
D10_13chromosomeD10_13:46870829..46870993 +
CM016626.1chromosomeCM016626.1:134383546..134383710 +
Dt_chr13chromosomeDt_chr13:18436385..18436549 -
D13chromosomeD13:45672624..45672788 +
A13chromosomeA13:64217411..64217575 +
Ghir_D13chromosomeGhir_D13:48931289..48931453 +
Ghir_A13chromosomeGhir_A13:91160960..91161124 +
D13chromosomeD13:50136056..50136220 +
A13chromosomeA13:94103637..94103801 +
D13chromosomeD13:49096401..49096565 +
A13chromosomeA13:92139424..92139588 +
D13chromosomeD13:46029489..46029653 +
A13chromosomeA13:90926042..90926206 +
At13chromosomeAt13:69489408..69489564 +
scaffold3990supercontigscaffold3990:287522..287678 +
Gbar_D13chromosomeGbar_D13:45681052..45681216 +
Gbar_A13chromosomeGbar_A13:92824866..92825022 -
D13chromosomeD13:47020053..47020217 +
A13chromosomeA13:96040917..96041073 +
CM017635.1chromosomeCM017635.1:46849858..46850022 +
CM017622.1chromosomeCM017622.1:93509997..93510161 +
CM017661.1chromosomeCM017661.1:49990555..49990719 +
CM017648.1chromosomeCM017648.1:98501643..98501807 +
CM017713.1chromosomeCM017713.1:46997318..46997482 +
CM017700.1chromosomeCM017700.1:93941557..93941721 +
D13chromosomeD13:50129865..50130029 +
A13chromosomeA13:94543804..94543968 +
Chr13chromosomeChr13:99471909..99472073 +
Chr13chromosomeChr13:103901115..103901279 +
Chr13chromosomeChr13:44729302..44729466 +
B_13chromosomeB_13:18978747..18978911 -
Chr13chromosomeChr13:46207731..46207895 +
chr13chromosomechr13:33527819..33527983 +
Chr13chromosomeChr13:48519452..48519620 +
Chr13chromosomeChr13:31112806..31112970 +
Chr13chromosomeChr13:24211520..24211684 +
Chr13chromosomeChr13:30352178..30352342 +
E13chromosomeE13:94081724..94081888 +
F13chromosomeF13:80259830..80259994 +
Chr13chromosomeChr13:26854459..26854623 -
Germplasm
Stock NameType
3-79accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch01_At.01N/A32.9HAU030aView
2Yumian-1 x T586, RIL (2006)AD_ch08_At.08N/A0HAU030bView
3Yumian-1 x T586, RIL (2009)AD_ch01_At.01N/A41.3HAU030/1200yView
4Yumian-1 x T586, RIL (2009)AD_ch08_At.08N/A35.6HAU030/500tView
5Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A59.9HAU0030aView
6Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A52HAU0030bView
Sequence
>HAU0030 ID=HAU0030; Name=HAU0030; organism=Gossypium barbadense; type=genetic_marker; length=165bp
CGAAGACAAAGAAACACAGAGCAGAGAGAGAGACTAAGGGTGAAAATGGC
CTGGTGTAGTTTAAGGTCTATTCACGTTCCAACCGTCGATGTCGGATTAC
TACGCACTCGCTCCCCGTTAGCCGCTGTCGGTGGAGTCGTTGCCGGCTCT
TCATTTTTGCGATCT