Gh568, Gh568 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh568
Genbank IDDQ908505
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908505
Source Typegenomic
Repeat MotifTA(7)
Primer 1Gh568_F: GTCTTTGATCAACTGAATTGTGTGC
Primer 2Gh568_R: TGAATGAAAGGGAAACAGGTTTACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:4254826..4254938 +
A12chromosomeA12:7376433..7376547 -
CM018226.1chromosomeCM018226.1:4152255..4152365 +
CM018213.1chromosomeCM018213.1:6919341..6919463 -
D5_12chromosomeD5_12:53339594..53339722 -
KI_12chromosomeKI_12:13398758..13398874 +
tig00016096_CRI-A2_v1.0.a1chromosometig00016096_CRI-A2_v1.0.a1:417564..417688 -
D10_12chromosomeD10_12:3871361..3871475 +
CM016625.1chromosomeCM016625.1:120418332..120418450 -
Dt_chr8chromosomeDt_chr8:588076..588188 -
At_chr8chromosomeAt_chr8:38725756..38725870 -
D12chromosomeD12:4070905..4071017 +
A12chromosomeA12:7025616..7025730 -
Ghir_D12chromosomeGhir_D12:4254421..4254533 +
Ghir_A12chromosomeGhir_A12:7099410..7099522 -
D12chromosomeD12:4193254..4193366 +
A12chromosomeA12:6831133..6831247 -
D12chromosomeD12:4273698..4273810 +
A12chromosomeA12:7147184..7147298 -
D12chromosomeD12:4237238..4237350 +
A12chromosomeA12:7125130..7125248 -
Gbar_D12chromosomeGbar_D12:4122387..4122497 +
Gbar_A12chromosomeGbar_A12:7052358..7052480 -
D12chromosomeD12:4064760..4064870 +
A12chromosomeA12:6842324..6842442 -
CM017634.1chromosomeCM017634.1:4170900..4171009 +
CM017621.1chromosomeCM017621.1:6839448..6839566 -
CM017660.1chromosomeCM017660.1:4149639..4149751 +
CM017647.1chromosomeCM017647.1:7268490..7268601 -
CM017712.1chromosomeCM017712.1:4146896..4147006 +
CM017699.1chromosomeCM017699.1:6783360..6783478 -
D12chromosomeD12:4407484..4407596 +
A12chromosomeA12:7171310..7171424 -
Chr12chromosomeChr12:5097402..5097522 +
Chr12chromosomeChr12:5146831..5146957 +
Chr12chromosomeChr12:4070579..4070707 +
B_12chromosomeB_12:5264179..5264286 +
Chr08chromosomeChr08:4049255..4049367 +
chr08chromosomechr08:3953629..3953745 +
Chr_08chromosomeChr_08:3990621..3990745 +
Chr08chromosomeChr08:4027918..4028022 +
Chr08chromosomeChr08:3848978..3849191 +
Chr08chromosomeChr08:2713631..2713745 +
Chr08chromosomeChr08:3740442..3740652 +
E12chromosomeE12:5244432..5244549 +
F12chromosomeF12:4272800..4272922 +
Chr12chromosomeChr12:155122312..155122446 -
Chr08chromosomeGh568:1..499 .
Chr08:4039047..4039566 +
Chr8chromosomeGh568:1..499 .
Chr8:68013274..68013791 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908505DQ908505Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A44.69Gh568aView
20-153 x sGK9708, RIL (2016)AD_ch12_At.12N/A0Gh568aView
3Emian-22 x 3-79, BC1 (2011)AD_ch26_Dt.12N/A12.33Gh568bView
40-153 x sGK9708, RIL (2016)AD_ch12_At.12N/A7Gh568bView
5TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A33.74GH568View
6TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A33.7GH568View
7GX1135 x VGX100-2, RIL (2016)AD_ch12_At.12N/A20.8GH568View
8CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A97.5GH568View
9TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A33.74GH568View
10TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A42.9Gh568-200View
11TM-1 x Hai-7124, BC1 (2012)AD_ch26_Dt.12N/A36.9Gh568-120View
Sequence
>Gh568 ID=Gh568; Name=Gh568; organism=Gossypium hirsutum; type=genetic_marker; length=113bp
GTCTTTGATCAACTGAATTGTGTGCATATATATATATATACTTCTTCTTC
TGGTCAATTTGTGAACAAATTTTTGGAAAATCTTCCAGGGTAAACCTGTT
TCCCTTTCATTCA