Gh459, Gh459 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh459
Genbank IDDQ908398
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908398
Source Typegenomic
Repeat MotifTCT(13)
Primer 1Gh459_F: AGGTGAGGAATCCATAGCTTGTTG
Primer 2Gh459_R: CCTAGTTCATCACCATTTCATCAGC
PolymorphismP_ Gh459
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:8354954..8355121 +
CM018219.1chromosomeCM018219.1:7751167..7751356 +
D5_05chromosomeD5_05:7433747..7433902 +
D10_05chromosomeD10_05:53098699..53098876 -
Dt_chr9chromosomeDt_chr9:58838377..58838545 +
scaffold4075_D05supercontigscaffold4075_D05:64772..64940 -
Ghir_D05chromosomeGhir_D05:8185299..8185467 +
Ghir_D03chromosomeGhir_D03:37872303..37872447 +
Ghir_A05chromosomeGhir_A05:9124275..9124411 +
Ghir_D11chromosomeGhir_D11:15570109..15570255 -
D05chromosomeD05:7945324..7945492 +
D05chromosomeD05:8121742..8121910 +
D05chromosomeD05:7981056..7981224 +
Dt03chromosomeDt03:34330226..34330372 +
scaffold2110supercontigscaffold2110:55732..55878 +
scaffold1693supercontigscaffold1693:661116..661262 +
scaffold11670supercontigscaffold11670:13395..13531 -
Gbar_D05chromosomeGbar_D05:8093444..8093633 +
Gbar_D03chromosomeGbar_D03:36848982..36849132 +
Gbar_A05chromosomeGbar_A05:8669132..8669268 +
Gbar_D11chromosomeGbar_D11:15262624..15262770 -
D05chromosomeD05:8198219..8198408 +
D03chromosomeD03:39421950..39422113 +
CM017627.1chromosomeCM017627.1:8079002..8079176 +
CM017653.1chromosomeCM017653.1:8337216..8337369 +
CM017705.1chromosomeCM017705.1:8008789..8008978 +
D05chromosomeD05:8232351..8232519 +
Chr05chromosomeChr05:7466961..7467116 +
Chr09chromosomeChr09:7666952..7667124 +
Chr_09chromosomeChr_09:7155674..7155852 +
Chr09chromosomeChr09:7979512..7979679 +
Chr09chromosomeChr09:7151325..7151484 +
Chr13chromosomeChr13:189540802..189540964 -
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908398DQ908398Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A176.85Gh459View
2TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A47Gh459View
3TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A143.8Gh459View
4TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A143.78GH459View
Sequence
>Gh459 ID=Gh459; Name=Gh459; organism=Gossypium hirsutum; type=genetic_marker; length=169bp
AGGTGAGGAATCCATAGCTTGTTGCATTGTTTTTGAACGGTTGTTTCTTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTTGCTGTGT
TCTAATAATTCATGTTTTTTAGCGCATTAAAATATAAATTTATAGCTGAT
GAAATGGTGATGAACTAGG