Gh388, Gh388 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh388
Genbank IDDQ908327
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908327
Source Typegenomic
Repeat MotifCTT(5)
Primer 1Gh388_F: CATCATCATCGTCGTCGCCG
Primer 2Gh388_R: GCAATGGAAGCTTTCGTCTCTTTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:2448816..2448961 -
A05chromosomeA05:2560381..2560525 -
CM018219.1chromosomeCM018219.1:2241557..2241702 -
CM018206.1chromosomeCM018206.1:2564651..2564785 -
D5_05chromosomeD5_05:2111236..2111391 -
KI_05chromosomeKI_05:1885661..1885818 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:2438475..2438619 -
D10_05chromosomeD10_05:58351700..58351845 +
CM016626.1chromosomeCM016626.1:3644502..3644649 -
Dt_chr9chromosomeDt_chr9:67110621..67110766 +
At_chr9chromosomeAt_chr9:49419775..49419919 -
D05chromosomeD05:2290127..2290272 -
A05chromosomeA05:1910843..1910987 -
Ghir_D05chromosomeGhir_D05:2423634..2423779 -
Ghir_A05chromosomeGhir_A05:2593333..2593477 -
D05chromosomeD05:2260833..2260978 -
A05chromosomeA05:2507152..2507296 -
D05chromosomeD05:2333049..2333194 -
A05chromosomeA05:2568226..2568370 -
D05chromosomeD05:2337429..2337574 -
A05chromosomeA05:2727048..2727192 -
At05chromosomeAt05:735079..735213 -
scaffold7279supercontigscaffold7279:49542..49687 +
scaffold10041supercontigscaffold10041:87294..87428 -
Scaffold2300supercontigScaffold2300:145532..145666 -
Gbar_D05chromosomeGbar_D05:2285235..2285380 -
D05chromosomeD05:2466987..2467132 -
A05chromosomeA05:2612081..2612215 -
CM017627.1chromosomeCM017627.1:2309117..2309262 -
CM017614.1chromosomeCM017614.1:2542316..2542460 -
CM017653.1chromosomeCM017653.1:2289503..2289648 -
CM017640.1chromosomeCM017640.1:2614505..2614649 -
CM017705.1chromosomeCM017705.1:2290921..2291066 -
CM017692.1chromosomeCM017692.1:2496012..2496156 -
D05chromosomeD05:2358471..2358616 -
A05chromosomeA05:2663628..2663772 -
Chr05chromosomeChr05:2683811..2683952 -
Chr05chromosomeChr05:2294748..2294892 -
Chr05chromosomeChr05:2117465..2117620 -
B_05chromosomeB_05:83550615..83550759 +
Chr09chromosomeChr09:2239572..2239711 -
chr09chromosomechr09:2087503..2087648 -
Chr_09chromosomeChr_09:2396359..2396504 -
Chr09chromosomeChr09:2285892..2286049 -
Chr09chromosomeChr09:2085020..2085158 -
Chr09chromosomeChr09:2094432..2094571 -
E05chromosomeE05:2772265..2772404 -
F05chromosomeF05:2211417..2211565 -
Chr13chromosomeChr13:196364260..196364405 +
Chr09chromosomeGh388:1..648 .
Chr09:2091578..2092236 -
Chr9chromosomeGh388:1..648 .
Chr9:4551115..4551773 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908327DQ908327Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch05_At.05N/A38.5GH388View
2GX1135 x GX100-2, RIL (2015)AD_ch05_At.05N/A114.1GH388View
3GX1135 x GX100-2, RIL (2016)AD_ch05_At.05N/A114.1GH388View
Sequence
>Gh388 ID=Gh388; Name=Gh388; organism=Gossypium hirsutum; type=genetic_marker; length=144bp
CATCATCATCGTCGTCGCCGTCTTCTTCTTCTTCTTCTGATCTTTTCCTT
TCTCTCAGAAACCCAGGACACGCCCTTCATTCAAACACGGGGAGAGAGAG
GGAGAGAGAGGGAGAGAGAAGAAAGAGACGAAAGCTTCCATTGC