Gh157, Gh157 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh157
Genbank IDDQ908099
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908099
Source Typegenomic
Repeat MotifCA(9)
Primer 1Gh157_F: TCTCTGGAGGCTAACCTTGTG
Primer 2Gh157_R: AGATTCATTGCAGTGGAATATCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908099
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:11366086..11366284 +
A13chromosomeA13:7454263..7454457 -
CM018214.1chromosomeCM018214.1:6900158..6900354 -
CM018214.1chromosomeCM018214.1:6941125..6941317 -
D5_13chromosomeD5_13:10574871..10575067 +
KI_13chromosomeKI_13:5561835..5562031 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:17343114..17343312 +
D10_13chromosomeD10_13:10599879..10600073 +
CM016626.1chromosomeCM016626.1:49100394..49100594 -
Dt_chr13chromosomeDt_chr13:46983278..46983476 +
At_chr8chromosomeAt_chr8:16617002..16617196 +
D13chromosomeD13:10925661..10925859 +
A13chromosomeA13:6558536..6558730 -
Ghir_D13chromosomeGhir_D13:10926578..10926774 +
D13chromosomeD13:10667419..10667617 +
A13chromosomeA13:6907536..6907730 -
D13chromosomeD13:11148872..11149070 +
A13chromosomeA13:6953990..6954184 -
D13chromosomeD13:10820608..10820806 +
A13chromosomeA13:7005143..7005339 -
scaffold2313supercontigscaffold2313:215631..215827 +
scaffold3554supercontigscaffold3554:403743..403941 -
Gbar_D13chromosomeGbar_D13:10779841..10780039 +
Gbar_A13chromosomeGbar_A13:7026678..7026874 -
D13chromosomeD13:10184022..10184220 +
A13chromosomeA13:6826848..6827044 -
CM017635.1chromosomeCM017635.1:10660103..10660301 +
CM017622.1chromosomeCM017622.1:7110379..7110577 -
CM017661.1chromosomeCM017661.1:11235947..11236145 +
CM017648.1chromosomeCM017648.1:7351619..7351813 -
CM017713.1chromosomeCM017713.1:10767204..10767402 +
CM017700.1chromosomeCM017700.1:6729396..6729592 -
D13chromosomeD13:11319006..11319204 +
A13chromosomeA13:7348651..7348845 -
Chr13chromosomeChr13:16557834..16558030 +
Chr13chromosomeChr13:17295535..17295733 +
Chr13chromosomeChr13:10486270..10486466 +
B_13chromosomeB_13:81015252..81015452 +
Chr13chromosomeChr13:10979305..10979505 +
chr13chromosomechr13:8913336..8913530 +
Chr_13chromosomeChr_13:9065981..9066279 +
Chr13chromosomeChr13:11119721..11119917 +
Chr13chromosomeChr13:9309311..9309620 +
Chr13chromosomeChr13:6681650..6681846 +
Chr13chromosomeChr13:9091315..9091511 +
E13chromosomeE13:15992239..15992434 -
F13chromosomeF13:13105448..13105645 -
Chr13chromosomeChr13:146403247..146403445 +
Chr13chromosomeGh157:1..611 .
Chr13:10553545..10554152 +
Chr13chromosomeGh157:1..611 .
Chr13:22282205..22282812 +
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908099DQ908099Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, F2 (2013)AD_ch13_At.13N/A125.8GH157View
2GX1135 x GX100-2, RIL (2016)AD_ch13_At.13N/A70.5GH157View
30-153 x sGK9708, RIL (2016)AD_ch13_At.13N/A13.8GH157View
Sequence
>Gh157 ID=Gh157; Name=Gh157; organism=Gossypium hirsutum; type=genetic_marker; length=199bp
TCTCTGGAGGCTAACCTTGTGAAAGATTTTGACAAGGTATGCTACATGAT
GGCATTCATTTGTGTATGCATGCTCACACACACACACACACACCAGCAGA
GATATTTTTCACCTGAAAGATGATTTTCCATTAAATATCAAATGTCATAG
ATTGTTAGTTGTTATAGGCGTTACATGGATATTCCACTGCAATGAATCT