DPL0849, DPL0849 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0849
Genbank IDGQ395195
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395195
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0849_F: CTCCCTTTGTAAGTGTTTGATG
Primer 2DPL0849_R: CCGCTGGTTTAATCGTCATT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:24872505..24872681 -
A08chromosomeA08:37991821..37991969 -
CM018209.1chromosomeCM018209.1:40488940..40489088 +
CM018222.1chromosomeCM018222.1:23295624..23295800 -
D5_08chromosomeD5_08:22007900..22008038 -
KI_08chromosomeKI_08:13925746..13925910 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:48511982..48512130 -
CM016621.1chromosomeCM016621.1:95415849..95416025 +
scaffold3602.1supercontigscaffold3602.1:20797..20945 +
Dt_chr4chromosomeDt_chr4:15511555..15511731 -
D08chromosomeD08:23222068..23222244 -
A08chromosomeA08:33720186..33720334 -
Ghir_A08chromosomeGhir_A08:43163425..43163573 +
Ghir_D08chromosomeGhir_D08:23462251..23462427 -
A08chromosomeA08:43724404..43724552 +
D08chromosomeD08:22949229..22949405 -
A08chromosomeA08:43736434..43736582 +
D08chromosomeD08:22699039..22699215 -
D08chromosomeD08:23155075..23155251 -
A08chromosomeA08:33333486..33333637 -
At08chromosomeAt08:36347820..36348006 -
scaffold5377supercontigscaffold5377:262956..263132 +
scaffold15870supercontigscaffold15870:81643..81829 -
Gbar_A08chromosomeGbar_A08:41716088..41716236 +
Gbar_D08chromosomeGbar_D08:23223278..23223454 -
A08chromosomeA08:40890039..40890187 +
D08chromosomeD08:23486716..23486892 -
CM017617.1chromosomeCM017617.1:42133202..42133350 +
CM017630.1chromosomeCM017630.1:23315365..23315541 -
CM017643.1chromosomeCM017643.1:45621901..45622049 +
CM017656.1chromosomeCM017656.1:25064007..25064183 -
CM017695.1chromosomeCM017695.1:41256628..41256776 +
CM017708.1chromosomeCM017708.1:23397602..23397778 -
A08chromosomeA08:44892862..44893010 +
D08chromosomeD08:23542964..23543140 -
Chr08chromosomeChr08:46648902..46649050 +
Chr08chromosomeChr08:46324670..46324818 +
Chr08chromosomeChr08:22021312..22021450 -
B_08chromosomeB_08:36808960..36809098 -
Chr04chromosomeChr04:22598603..22598779 -
chr04chromosomechr04:18112516..18112692 -
Chr_04chromosomeChr_04:16154117..16154293 -
Chr04chromosomeChr04:23722540..23722716 -
Chr04chromosomeChr04:15815887..15816025 -
Chr04chromosomeChr04:12966649..12966825 -
Chr04chromosomeChr04:15703027..15703165 -
F08chromosomeF08:34662118..34662309 -
Chr08chromosomeChr08:123521301..123521869 +
Chr04chromosomeDPL0849:1..566 .
Chr04:21929470..21930026 -
Chr4chromosomeDPL0849:1..566 .
Chr4:11106523..11107079 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395195GQ395195Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A55.9DPL0849View
2Yumian-1 x 7235, RIL (2015)AD_ch08_At.08N/A61.8DPL0849View
3DH962 X Ji Mian 5, F2 (2015)AD_ch08_At.08N/A54.65MON_DPL0849View
4DH962 x Ji Mian 5, RIL (2015)AD_ch08_At.08N/A34.5MON_DPL0849View
5MGG-293-793, MAGIC (2018)AD_ch08_At.08N/A67.6DPL0849View
Sequence
>DPL0849 ID=DPL0849; Name=DPL0849; organism=Gossypium hirsutum; type=genetic_marker; length=149bp
CTCCCTTTGTAAGTGTTTGATGTTTTGATTTTACAGTTTCTGAAAATGGC
TCTTTTGTTGTTGTTGTTGTTGTTGGAGTTCTCAGAAAGGTGATTTAAAG
CCACCTTTGAAGAAAGAAGGAGTAGAAGGAATGACGATTAAACCAGCGG