DPL0792, DPL0792 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0792
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0792_orig
Source Typegenomic
Repeat Motif(GA)18
PCR ConditionAnnealing temperature: 55
Primer 1DPL0792_F: AACCTACTCCATCAAGACCCATTA
Primer 2DPL0792_R: AGGACGTTTCTTGAGGATATCAGA
PolymorphismP_ DPL0792
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D5_05chromosomeD5_05:140281..140396 -
Ghir_D05chromosomeGhir_D05:270448..270542 -
Ghir_A05chromosomeGhir_A05:211066..211148 -
scaffold17721supercontigscaffold17721:92823..92905 +
scaffold15300supercontigscaffold15300:266005..266097 +
Gbar_D05chromosomeGbar_D05:157623..157715 -
Gbar_A05chromosomeGbar_A05:83772..83854 -
Chr05chromosomeChr05:141023..141135 -
F05chromosomeF05:205389..205511 -
Chr09chromosomeDPL0792:1..605 .
Chr09:135286..135892 -
Chr9chromosomeDPL0792:1..605 .
Chr9:142956..143562 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0792_origDPL0792_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A235.91DPL0792View
2AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A3DPL0792View
3TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A0DPL0792View
4TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A182.3DPL0792View
5TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A182.34DPL0792View
Sequence
>DPL0792 ID=DPL0792; Name=DPL0792; organism=Gossypium hirsutum; type=genetic_marker; length=111bp
AACCTACTCCATCAAGACCCATTATAGTGTTCATGTCAAGAAAAGGGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTACTTCTGATATCCTCA
AGAAACGTCCT