DPL0752, DPL0752 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0752
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0752_orig
Source Typegenomic
Repeat Motif(CA)9+(AC)26
PCR ConditionAnnealing temperature: 55
Primer 1DPL0752_F: CACATCACCTAATTACCATTGAAGC
Primer 2DPL0752_R: TATCGTGAATATGTATGTGCGTGG
PolymorphismP_ DPL0752
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:93656395..93656649 -
Ghir_A01chromosomeGhir_A01:112060336..112060520 -
At01chromosomeAt01:77413732..77413940 -
Chr01chromosomeChr01:117269185..117269383 -
Chr02chromosomeChr02:5697660..5697914 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0752_origDPL0752_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A88.31DPL0752View
2Yumian-1 x T586, RIL (2006)AD_ch01_At.01N/A63.1DPL0752View
3Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A69.6DPL0752View
4DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A117DPL0752View
5DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A117DPL0752View
6TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A56.1DPL0752View
7GX1135 x GX100-2, RIL (2016)AD_ch01_At.01N/A70.6DPL0752View
8DH962 x Ji Mian 5, RIL (2015)AD_ch01_At.01N/A20.8DPL0752View
9DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A20.8DPL0752View
10CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A60.1DPL0752View
11Yumian-1 x T586, RIL (2009)AD_ch01_At.01N/A60.4DPL0752/190yView
12DH962 x Jinmian-6, F2 (2009)AD_chUN/A141.2DPL752View
13TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A56.06DPL0752View
Sequence
>DPL0752 ID=DPL0752; Name=DPL0752; organism=Gossypium hirsutum; type=genetic_marker; length=243bp
CACATCACCTAATTACCATTGAAGCAAATAAACATACATATAAATAAACA
TACTCAACAAGTTATCATTATCAAGATCATTGCCATCACACACACACACA
CACATACACACACACACACACACACACACACACACACACACACACACACA
CACACACGTGCGCGCGCGCGCGCATGTACGCACGCACGCGCGCATGTACC
CACGCACGCACACACGCACCCACGCACATACATATTCACGATA