DPL0681, DPL0681 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0681
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0681_orig
Source Typegenomic
Repeat Motif(TCT)6
PCR ConditionAnnealing temperature: 55
Primer 1DPL0681_F: AAATGGACAAATTCGACTCCC
Primer 2DPL0681_R: TTCGACTCGACTGAATCGTAACTA
PolymorphismP_ DPL0681
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2006supercontigscaffold_2006:18798..18993 -
D06chromosomeD06:21080361..21080556 -
A06chromosomeA06:33659409..33659601 -
CM018220.1chromosomeCM018220.1:19765131..19765326 -
CM018207.1chromosomeCM018207.1:31705290..31705485 -
D5_06chromosomeD5_06:19969788..19969983 -
KI_06chromosomeKI_06:10462715..10462913 -
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:34962220..34962412 -
D10_06chromosomeD10_06:41996487..41996685 +
CM016619.1chromosomeCM016619.1:100954955..100955144 +
Dt_chr10chromosomeDt_chr10:28286584..28286779 -
D06chromosomeD06:20191994..20192189 -
A06chromosomeA06:31677342..31677534 -
Ghir_D06chromosomeGhir_D06:20724602..20724797 -
Ghir_A06chromosomeGhir_A06:33556955..33557147 -
D06chromosomeD06:20195667..20195862 -
A06chromosomeA06:32518969..32519161 -
D06chromosomeD06:20674682..20674877 -
A06chromosomeA06:32699234..32699426 -
D06chromosomeD06:20232609..20232804 -
A06chromosomeA06:32549111..32549303 -
At06chromosomeAt06:29185046..29185241 -
scaffold5216supercontigscaffold5216:175119..175314 +
scaffold50706supercontigscaffold50706:2387..2582 -
Gbar_D06chromosomeGbar_D06:19940333..19940528 -
Gbar_A06chromosomeGbar_A06:31543980..31544166 -
D06chromosomeD06:19675877..19676072 -
A06chromosomeA06:31677700..31677895 -
CM017628.1chromosomeCM017628.1:20530675..20530870 -
CM017615.1chromosomeCM017615.1:32749717..32749909 -
CM017654.1chromosomeCM017654.1:20114837..20115032 -
CM017641.1chromosomeCM017641.1:34110894..34111086 -
CM017706.1chromosomeCM017706.1:19955334..19955529 -
CM017693.1chromosomeCM017693.1:32252200..32252392 -
D06chromosomeD06:20954538..20954733 -
A06chromosomeA06:33561492..33561684 -
Chr06chromosomeChr06:34611180..34611372 -
Chr06chromosomeChr06:35894655..35894847 -
Chr06chromosomeChr06:19763908..19764103 -
B_06chromosomeB_06:67292713..67292902 +
Chr10chromosomeChr10:20292049..20292241 -
chr10chromosomechr10:17023370..17023562 -
Chr_10chromosomeChr_10:15625882..15626074 -
Chr10chromosomeChr10:21210493..21210685 -
Chr10chromosomeChr10:14147488..14147683 -
Chr10chromosomeChr10:12221502..12221691 -
Chr10chromosomeChr10:14789247..14789439 -
E06chromosomeE06:83742013..83742202 +
F06chromosomeF06:27511941..27512133 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0681_origDPL0681_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A73.34DPL0681View
2AD-genome wide Reference Map (2009)AD_ch06_At.06N/A127DPL0681View
3TM-1 x 3-79, RIL (2012)AD_ch06_At.06N/A64.51DPL0681View
4TM-1 x 3-79, RIL (2014)AD_ch06_At.06N/A64.5DPL0681View
5TM-1 x 3-79, RIL (2012.v3)AD_ch06_At.06N/A64.51DPL0681View
Sequence
>DPL0681 ID=DPL0681; Name=DPL0681; organism=Gossypium hirsutum; type=genetic_marker; length=193bp
AAATGGACAAATTCGACTCCCCATCATCTTCTTCTTCTTCTTCTTCGACT
TCTATGTCCACTTCAACATTATCATCTTCGTCATCGGTTTCCTCTTTGGT
TTCTCACATGGAGTTGTCTTCTGGGCCAGACGAGTTAAGCGAGATAGTGG
AGTTGCCGAGCCTCGGGACTAGTTACGATTCAGTCGAGTCGAA