DPL0627, DPL0627 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0627
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0627_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0627_F: ATAGGATTTACAGAGGAGGGAACC
Primer 2DPL0627_R: GTAATGGTAAAGTGATGTGGCAGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A11chromosomeA11:101660758..101660978 +
A06chromosomeA06:119530287..119530521 -
CM018212.1chromosomeCM018212.1:101503866..101504083 +
CM018207.1chromosomeCM018207.1:114337952..114338192 -
D5_09chromosomeD5_09:39986693..39986900 +
D5_02chromosomeD5_02:44263890..44264114 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:131084050..131084266 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:15524684..15524892 -
CM016621.1chromosomeCM016621.1:112264476..112264682 -
CM016620.1chromosomeCM016620.1:109130531..109130750 -
scaffold1851.1supercontigscaffold1851.1:222303..222540 -
Dt_chr6chromosomeDt_chr6:3703286..3703535 -
At_chr1chromosomeAt_chr1:8743164..8743384 -
A11chromosomeA11:81494405..81494625 +
A06chromosomeA06:101676308..101676545 -
Ghir_A11chromosomeGhir_A11:110541163..110541383 +
Ghir_A06chromosomeGhir_A06:122112300..122112537 -
A11chromosomeA11:109199256..109199476 +
A06chromosomeA06:124607302..124607539 -
A11chromosomeA11:106604171..106604391 +
A06chromosomeA06:124190523..124190760 -
A11chromosomeA11:103435786..103436006 +
A06chromosomeA06:119986170..119986407 -
At01chromosomeAt01:35084297..35084490 -
scaffold32144supercontigscaffold32144:50874..51066 +
scaffold17187supercontigscaffold17187:154571..154811 +
scaffold3069supercontigscaffold3069:219032..219225 -
scaffold12227supercontigscaffold12227:34712..34932 -
Gbar_A11chromosomeGbar_A11:99925045..99925265 +
Gbar_A06chromosomeGbar_A06:113336743..113336983 -
Gbar_A01chromosomeGbar_A01:31137723..31137916 -
A11chromosomeA11:103165195..103165415 +
A06chromosomeA06:116377111..116377351 -
CM017620.1chromosomeCM017620.1:106953668..106953888 +
CM017615.1chromosomeCM017615.1:119700717..119700930 -
CM017646.1chromosomeCM017646.1:113480805..113481034 +
CM017641.1chromosomeCM017641.1:124896793..124897024 -
CM017636.1chromosomeCM017636.1:32524447..32524667 -
CM017698.1chromosomeCM017698.1:102046026..102046236 +
CM017693.1chromosomeCM017693.1:117598392..117598626 -
A11chromosomeA11:111349230..111349450 +
A06chromosomeA06:126272793..126273030 -
Chr11chromosomeChr11:113213028..113213233 -
Chr06chromosomeChr06:127086219..127086435 -
Chr11chromosomeChr11:113580537..113580745 +
Chr06chromosomeChr06:129217595..129217811 -
Chr09chromosomeChr09:46208500..46208707 +
Chr02chromosomeChr02:46355237..46355461 +
B_11chromosomeB_11:92065946..92066180 +
Chr06chromosomeChr06:46934589..46934817 +
chr03chromosomechr03:32855335..32855547 +
E12chromosomeE12:113150991..113151219 +
F09chromosomeF09:58046160..58046377 -
F08chromosomeF08:3324552..3324781 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0627_origDPL0627_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_chUN/A0MON-DPL0627View
2Yumian-1 x 7235, RIL (2015)AD_ch08_At.08N/A0.5DPL0627aView
3CCRI-35 x Yumian-1, RIL (2015)AD_ch08_At.08N/A92.1DPL0627aView
4Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A47DPL0627bView
5CCRI-35 x Yumian-1, RIL (2015)AD_ch23_Dt.09N/A21.8DPL0627bView
6Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A100DPL0627cView
7CCRI-35 x Yumian-1, RIL (2017)AD_ch08_At.08N/A144.39DPL0627View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch23_Dt.09N/A171.04DPL0627bView
Sequence
>DPL0627 ID=DPL0627; Name=DPL0627; organism=Gossypium hirsutum; type=genetic_marker; length=209bp
ATAGGATTTACAGAGGAGGGAACCTGTTTTTCATCTGTTTTATCTCCAAG
TATCTCCATTTTTTCTCTTTCTCCTTCTTCTTCTTCTTCTTCATCTTCTT
CTCTTATTATTTTACTATATAAACCCTAAATTGCTACTGATATGGCTGTT
TAATTTGATGCTAACTGGCCAGCTGGACGCCGTCATCTGCCACATCACTT
TACCATTAC