DPL0603, DPL0603 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0603
Genbank IDGQ395083
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395083
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0603_F: AGAGAGCAATGCAACTCTTCTCA
Primer 2DPL0603_R: GAGGTAACTTCTGGTTGATGAATTG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395083
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:56686411..56686611 +
A07chromosomeA07:92456064..92456276 +
CM018221.1chromosomeCM018221.1:54662420..54662622 +
CM018208.1chromosomeCM018208.1:92464375..92464543 +
D5_07chromosomeD5_07:50073844..50074044 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:96091919..96092165 +
D10_07chromosomeD10_07:1506253..1506491 +
scaffold2269.1supercontigscaffold2269.1:54669..54881 -
scaffold104.1supercontigscaffold104.1:1304727..1304927 -
D07chromosomeD07:53801400..53801600 +
A07chromosomeA07:76932034..76932246 +
Ghir_D07chromosomeGhir_D07:57763104..57763304 +
Ghir_A07chromosomeGhir_A07:96391428..96391640 +
D07chromosomeD07:57007278..57007478 +
A07chromosomeA07:95311890..95312102 +
D07chromosomeD07:57386286..57386486 +
A07chromosomeA07:95387351..95387563 +
D07chromosomeD07:53718098..53718298 +
A07chromosomeA07:91900539..91900735 +
Dt07chromosomeDt07:59525194..59525396 +
scaffold37458supercontigscaffold37458:2187..2389 +
scaffold19235supercontigscaffold19235:8944..9112 -
scaffold12601supercontigscaffold12601:21462..21664 -
Gbar_D07chromosomeGbar_D07:55052425..55052627 +
Gbar_A07chromosomeGbar_A07:91406591..91406759 +
D07chromosomeD07:55634378..55634580 +
A07chromosomeA07:93723468..93723636 +
CM017629.1chromosomeCM017629.1:55593946..55594146 +
CM017616.1chromosomeCM017616.1:95425779..95425987 +
CM017655.1chromosomeCM017655.1:56600923..56601127 +
CM017642.1chromosomeCM017642.1:98312269..98312465 +
CM017707.1chromosomeCM017707.1:55668788..55668988 +
CM017694.1chromosomeCM017694.1:93763841..93764009 +
D07chromosomeD07:57982914..57983114 +
A07chromosomeA07:97577005..97577217 +
Chr07chromosomeChr07:99318634..99318864 +
Chr07chromosomeChr07:100665068..100665314 +
Chr07chromosomeChr07:1398060..1398262 -
Chr01chromosomeChr01:54528045..54528237 +
Chr_01chromosomeChr_01:39171654..39171915 +
Chr01chromosomeChr01:41306697..41307012 +
Chr01chromosomeChr01:32118162..32118360 +
Chr01chromosomeChr01:39908391..39908591 +
E07chromosomeE07:1299281..1299477 +
F07chromosomeF07:81114169..81114379 +
Chr07chromosomeChr07:156195396..156195614 +
Chr01chromosomeDPL0603:1..452 .
Chr01:54129494..54129911 +
Chr1chromosomeDPL0603:1..452 .
Chr1:3335267..3335682 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395083GQ395083Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DH962 X Ji Mian 5, F2 (2015)AD_ch07_At.07N/A64.75MON_DPL0603View
2DH962 x Ji Mian 5, RIL (2015)AD_ch07_At.07N/A9.9MON_DPL0603View
3Yumian-1 x 7235, RIL (2015)AD_ch07_At.07N/A1DPL0603View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch07_At.07N/A140.8DPL0603View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch16_Dt.07N/A17.4DPL0603View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A189.2DPL0603View
7LMY28 x XLZ24, RIL (2018)AD_ch07_At.07N/A115.23DPL0603View
8LMY22 x LY343, RIL (2016)chr.7N/A71.7DPL0603View
9LMY22 x LY343, RIL (2020)A07N/A0DPL0603View
10CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A150.68DPL0603View
Sequence
>DPL0603 ID=DPL0603; Name=DPL0603; organism=Gossypium hirsutum; type=genetic_marker; length=243bp
AGAGAGCAATGCAACTCTTCTCAATTCCAGAACATGAAGCAATGAAATAT
TTACAGCAAACAAGCAAGATTTTTGGTGTGTGTGTATGCATACATACATA
CATACATACATACATACATACATACATACATACATACATAAATTTATATA
CATATATATACATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
ATATGTACTACAATCAATCAATTCATCAACCAGAAGTTACCTC