DPL0568, DPL0568 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	DPL0568
Genbank ID	GQ395061
Type	SSR
Species	Gossypium hirsutum
Germplasm	Delta Opal
Source Sequence	GQ395061
Source Type	genomic
PCR Condition	Annealing temperature: 55
Primer 1	DPL0568_F: CAAGTTTGCTACTTTGGTCTCAATC
Primer 2	DPL0568_R: TTACGCGTCTACATTTCAACACTC
Publication	[view all]
Contact	Monsanto
Comment	Primer data obtained in 2009-05

Germplasm


Stock Name	Type
Delta Opal	TBD

Relationships

This genetic_marker is adjacent to the following primer feature(s):


Feature Name	Unique Name	Species	Type
DPL0568_F	DPL0568_F	Gossypium hirsutum	primer
DPL0568_R	DPL0568_R	Gossypium hirsutum	primer

This genetic_marker is adjacent to the following QTL feature(s):


Feature Name	Unique Name	Species	Type
50 span length	qSL50.T3-RIL_ch2.cs	Gossypium spp.	QTL
fiber length by weight	qFLW.T3-RIL_ch2.cs	Gossypium spp.	QTL
upper quartile length by weight	qUQLW.T3-RIL_ch2.cs	Gossypium spp.	QTL

This genetic_marker is located in the following QTL feature(s):


Feature Name	Unique Name	Species	Type
upper half mean length	qUHML.CY-RIL.17_ch01.ay15	Gossypium hirsutum	QTL

The following marker_locus feature(s) are an instance of this genetic_marker:


Feature Name	Unique Name	Species	Type
DPL0568	DPL0568	Gossypium hirsutum	marker_locus
DPL0568	DPL0568-73.901	Gossypium hirsutum	marker_locus
DPL0568	DPL0568-48.156	Gossypium hirsutum	marker_locus

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
GQ395061	GQ395061	Gossypium hirsutum	sequence_feature

Publications


Year	Publication
2009	Xiao J, Wu K, Fang DD, Stelly DM, Yu J, Cantrell RG. New SSR Markers for Use in Cotton (Gossypium spp.) Improvement. Journal of cotton science. 2009; 13(2):75-157

Contact

Name

Details

Monsanto

Country:

United States

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A02	chromosome	A02:82597702..82597821 +
CM018203.1	chromosome	CM018203.1:92785003..92785124 +
Chr2	chromosome	Chr2:61520428..61520537 +
Chr02_CRI-A2_v1.0.a1	chromosome	Chr02_CRI-A2_v1.0.a1:7787576..7787683 -
D10_02	chromosome	D10_02:7012123..7012237 +
At_chr8	chromosome	At_chr8:13132395..13132506 -
A02	chromosome	A02:76183105..76183222 +
Ghir_A02	chromosome	Ghir_A02:100473133..100473251 +
A02	chromosome	A02:98095306..98095417 +
A02	chromosome	A02:96737095..96737212 +
scaffold17720	supercontig	scaffold17720:17372..17489 -
Gbar_A02	chromosome	Gbar_A02:92910807..92910924 +
CM017637.1	chromosome	CM017637.1:102108522..102108649 +
CM017689.1	chromosome	CM017689.1:94755213..94755324 +

Sequence

>DPL0568 ID=DPL0568|Name=DPL0568|organism=Gossypium hirsutum|type=genetic_marker|length=110bp
CAAGTTTGCTACTTTGGTCTCAATCTAAAATGCCAATGAGTAAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGTGTTGAAATGT
AGACGCGTAA

Map Positions


#	Map Name	Linkage Group	Bin	Chromosome	Position	Locus	MapViewer
1	Monsanto SSR Bin Map, (2009)	Monsanto SSR Bin Map, (2009).BIN-SSR_chr02	N/A	AD_chr.02	50	DPL0568	View
2	TM-1 x 3-79, RIL (2014)	T3-RIL.14_chr02	N/A	AD_chr.02	48.2	DPL0568	View
3	CCRI-35 x Yumian-1, RIL (2015)	CY-RIL_chr02	N/A	AD_chr.02	42.1	DPL0568	View
4	CCRI-35 x Yumian-1, RIL (2017)	CY-RIL.17_chr02	N/A	At.02	73.9	DPL0568-73.901	View
5	TM-1 x 3-79, RIL (2012.v3)	T3-RIL.12v3_chr.02	N/A	AD_chr.02	48.16	DPL0568-48.156	View

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	GQ395061

Search form

DPL0568, DPL0568 (genetic_marker) Gossypium hirsutum