DPL0534, DPL0534 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0534
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0534_orig
Source Typegenomic
Repeat Motif(TGGA)4+(TGTA)5
PCR ConditionAnnealing temperature: 55
Primer 1DPL0534_F: TGAGACACATATGGAAAGAACACC
Primer 2DPL0534_R: CACCGAAACTGCAATGAGAGT
PolymorphismP_ DPL0534
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:50906401..50906529 +
D5_08chromosomeD5_08:43743784..43744160 +
Dt_chr10chromosomeDt_chr10:11316639..11316767 -
D08chromosomeD08:47307557..47307685 +
Ghir_D08chromosomeGhir_D08:50152457..50152582 +
D08chromosomeD08:51085309..51085437 +
D08chromosomeD08:50044631..50044759 +
D08chromosomeD08:47334343..47334471 +
D08chromosomeD08:49611820..49611964 +
CM017630.1chromosomeCM017630.1:49007417..49007587 +
CM017656.1chromosomeCM017656.1:50845958..50846111 +
D08chromosomeD08:50647147..50647275 +
Chr_04chromosomeChr_04:30798064..30798232 +
Chr04chromosomeDPL0534:1..694 .
Chr04:44396415..44397350 +
Chr4chromosomeDPL0534:1..694 .
Chr4:4380470..4381641 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0534_origDPL0534_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch24_Dt.08N/A40.37DPL0534View
2TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A41.98DPL0534View
3AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A111DPL0534View
4Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A44DPL0534View
5TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A48DPL0534View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A71.7DPL0534View
7TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A48.02DPL0534View
8PD 94042 x (AD)4-08, F2 (2016)AD_ch24_Dt.08N/A32.5DPL0534View
Sequence
>DPL0534 ID=DPL0534; Name=DPL0534; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
TGAGACACATATGGAAAGAACACCCCGAATTTAGGATCCATTTGGATGGA
TGGATGGATGTATGTATGTATGTATGTATGGTANTGTATGTAACATTCCT
CATAAAAGCAACTCTCATTGCAGTTTCGGTG