DPL0526, DPL0526 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0526
Genbank IDGQ395040
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395040
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0526_F: GTTCTTGGTCATGCTGGTAAGAAA
Primer 2DPL0526_R: TAGCCATATCCACCTTAGCAGATT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395040
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:63463754..63463897 +
A01chromosomeA01:102937787..102937942 +
CM018215.1chromosomeCM018215.1:61832342..61832485 +
CM018202.1chromosomeCM018202.1:112004399..112004538 +
D5_01chromosomeD5_01:55709484..55709631 +
KI_01chromosomeKI_01:37301306..37301445 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:98326264..98326423 +
D10_01chromosomeD10_01:881693..881852 -
CM016614.1chromosomeCM016614.1:136115311..136115446 +
At_chr9chromosomeAt_chr9:41400644..41400799 +
scaffold3227.1supercontigscaffold3227.1:112802..112945 -
D01chromosomeD01:60552332..60552475 +
A01chromosomeA01:98936697..98936852 +
Ghir_D01chromosomeGhir_D01:62263644..62263787 +
Ghir_A01chromosomeGhir_A01:116677326..116677481 +
D01chromosomeD01:63719048..63719191 +
A01chromosomeA01:117023100..117023255 +
D01chromosomeD01:63695663..63695806 +
A01chromosomeA01:114936645..114936800 +
D01chromosomeD01:60163447..60163590 +
A01chromosomeA01:111526485..111526644 +
scaffold15606supercontigscaffold15606:28273..28412 -
Gbar_D01chromosomeGbar_D01:62002208..62002351 +
Gbar_A01chromosomeGbar_A01:114529741..114529880 +
D01chromosomeD01:62681889..62682032 +
A01chromosomeA01:114529022..114529161 +
CM017623.1chromosomeCM017623.1:63019504..63019659 +
CM017610.1chromosomeCM017610.1:113059583..113059738 +
CM017649.1chromosomeCM017649.1:64538711..64538854 +
CM017636.1chromosomeCM017636.1:120610014..120610169 +
CM017701.1chromosomeCM017701.1:62490505..62490648 +
CM017688.1chromosomeCM017688.1:110679673..110679820 +
D01chromosomeD01:64176341..64176484 +
A01chromosomeA01:118613904..118614059 +
Chr01chromosomeChr01:121815723..121815886 +
Chr02chromosomeChr02:1092331..1092490 -
Chr01chromosomeChr01:51492770..51492905 +
B_01chromosomeB_01:97058167..97058310 +
Chr02chromosomeChr02:60433540..60433715 +
chr02chromosomechr02:46577702..46577849 +
Chr02_5050568chromosomeChr02_5050568:463..622 +
Chr02chromosomeChr02:61342917..61343056 +
Chr02chromosomeChr02:45132202..45132354 +
Chr02chromosomeChr02:45131944..45132080 +
Chr02chromosomeChr02:43460526..43460840 +
E01chromosomeE01:115866943..115867082 +
F01chromosomeF01:97541043..97541186 +
Chr01chromosomeChr01:972015..972150 -
Chr02chromosomeDPL0526:1..587 .
Chr02:61837773..61838339 +
Chr2chromosomeDPL0526:1..587 .
Chr2:926432..926998 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395040GQ395040Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A119.7DPL0526View
2Yumian-1 x 7235, RIL (2015)AD_ch01_At.01N/A1.4DPL0526View
3TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A24.7DPL0526View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch01_At.01N/A32DPL0526View
5Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A0DPL0526View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A139.7MON_DPL0526View
7W10 x TM-1, F2:3 (2015)AD_ch01_At.01N/A0MON-DPL0526View
8CCRI-35 x Yumian-1, RIL (2017)AD_ch01_At.01N/A89.13DPL0526View
9TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A24.68DPL0526View
10MGG-293-793, MAGIC (2018)AD_ch01_At.01N/A12.6DPL0526View
11TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A19.4dPL0526-260View
Sequence
>DPL0526 ID=DPL0526; Name=DPL0526; organism=Gossypium hirsutum; type=genetic_marker; length=156bp
GTTCTTGGTCATGCTGGTAAGAAAAAAACGTATGCATGTATGTATGTATA
TACATATGTATGTATGTATGTATGTATGTATTGATATTTGGACGTTTGTG
TATAGATGGAATTTGCCATGTTTATGTGGACAAATCTGCTAAGGTGGATA
TGGCTA