DPL0501, DPL0501 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0501
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0501_orig
Source Typegenomic
Repeat Motif(TATG)11
PCR ConditionAnnealing temperature: 55
Primer 1DPL0501_F: CAGCATCTTAGTTGTTGCTTCACT
Primer 2DPL0501_R: CTTGAGTGCTTGAGCAACCTTT
PolymorphismP_ DPL0501
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:4814291..4814510 +
A07chromosomeA07:4783431..4783630 +
CM018221.1chromosomeCM018221.1:4489788..4490019 +
CM018208.1chromosomeCM018208.1:5088593..5088792 +
D5_07chromosomeD5_07:4427169..4427400 +
KI_07chromosomeKI_07:33861229..33861420 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:5140170..5140373 +
D10_07chromosomeD10_07:49379293..49379497 -
CM016620.1chromosomeCM016620.1:109632839..109633040 -
scaffold787.1supercontigscaffold787.1:102118..102317 -
Dt_chr1chromosomeDt_chr1:41421537..41421756 -
D07chromosomeD07:4280807..4281006 +
A07chromosomeA07:4285388..4285587 +
Ghir_D07chromosomeGhir_D07:4750111..4750330 +
Ghir_A07chromosomeGhir_A07:5145519..5145718 +
D07chromosomeD07:4563297..4563516 +
A07chromosomeA07:4800914..4801113 +
D07chromosomeD07:4703529..4703748 +
A07chromosomeA07:5103573..5103772 +
D07chromosomeD07:4536502..4536721 +
A07chromosomeA07:5130706..5130905 +
scaffold10473supercontigscaffold10473:147367..147566 -
Gbar_D07chromosomeGbar_D07:4731145..4731376 +
Gbar_A07chromosomeGbar_A07:5066322..5066521 +
D07chromosomeD07:4657214..4657445 +
A07chromosomeA07:4950765..4950964 +
CM017629.1chromosomeCM017629.1:4937405..4937616 +
CM017616.1chromosomeCM017616.1:4871601..4871798 +
CM017655.1chromosomeCM017655.1:4801820..4802031 +
CM017642.1chromosomeCM017642.1:5071983..5072182 +
CM017707.1chromosomeCM017707.1:4716266..4716489 +
CM017694.1chromosomeCM017694.1:5055358..5055557 +
D07chromosomeD07:4813194..4813413 +
A07chromosomeA07:5157771..5157970 +
Chr07chromosomeChr07:5169420..5169623 +
Chr07chromosomeChr07:5143314..5143517 +
Chr07chromosomeChr07:49105427..49105658 -
B_07chromosomeB_07:5365757..5365966 +
Chr01chromosomeChr01:4597205..4597416 +
chr01chromosomechr01:4298199..4298863 +
Chr_01chromosomeChr_01:4638701..4638905 +
Chr01chromosomeChr01:4599219..4599438 +
Chr01chromosomeChr01:3579805..3580937 +
Chr01chromosomeChr01:3314534..3314751 +
E07chromosomeE07:88263670..88263869 -
F07chromosomeF07:4524520..4524727 +
Chr07chromosomeChr07:7101536..7101733 +
Chr01chromosomeDPL0501:1..573 .
Chr01:4395522..4396106 +
scaffold141supercontigDPL0501:1..573 .
scaffold141:756540..757124 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0501_origDPL0501_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A108.6DPL0501View
2TM-1 x 3-79, RIL (2012)AD_ch16_Dt.07N/A24.03DPL0501View
3TM-1 x 3-79, RIL (2014)AD_ch16_Dt.07N/A101.5DPL0501View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch07_At.07N/A113.5DPL0501View
5TM-1 x 3-79, RIL (2012.v3)AD_ch16_Dt.07N/A101.49DPL0501View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch16_Dt.07N/A39.3DPL0501View
Sequence
>DPL0501 ID=DPL0501; Name=DPL0501; organism=Gossypium hirsutum; type=genetic_marker; length=220bp
CAGCATCTTAGTTGTTGCTTCACTTGCTGCTTTCGCTGTTTCTCCACTCA
ATACCAAGCAGCGGTTAAAGAAGCAACATTCTATGCTTTCAGGTCAGTTA
ATATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGCATGC
GTATTGTTAGTTTACAGCTAATTTGTTGGCATTGGCATGCTTTTAGGAAA
AGGTTGCTCAAGCACTCAAG