DPL0425, DPL0425 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0425
Genbank IDGQ394995
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394995
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0425_F: CAAGAAAGTCAGCAGAGCCATAAT
Primer 2DPL0425_R: GCACTTGTACACAGATAAAGGAGAGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394995
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:17120404..17120634 +
A01chromosomeA01:22798373..22798587 +
D06chromosomeD06:3775391..3775605 -
CM018215.1chromosomeCM018215.1:16717893..16718123 +
CM018202.1chromosomeCM018202.1:20958604..20958819 +
D5_01chromosomeD5_01:16039281..16039495 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:23195947..23196162 +
D10_01chromosomeD10_01:44242254..44242445 -
CM016614.1chromosomeCM016614.1:31046207..31046422 +
At_chr2chromosomeAt_chr2:3370439..3370653 -
D01chromosomeD01:15915213..15915443 +
A01chromosomeA01:21508201..21508415 +
Ghir_D01chromosomeGhir_D01:17231054..17231284 +
Ghir_A01chromosomeGhir_A01:21330521..21330735 +
D01chromosomeD01:16823285..16823515 +
A01chromosomeA01:21373490..21373704 +
D01chromosomeD01:16758679..16758906 +
A01chromosomeA01:21893197..21893411 +
D01chromosomeD01:17126157..17126387 +
A01chromosomeA01:21772855..21773070 +
At01chromosomeAt01:23162051..23162266 +
At01chromosomeAt01:23158143..23158358 +
scaffold10507supercontigscaffold10507:438364..438579 +
scaffold10507supercontigscaffold10507:434456..434671 +
scaffold1179supercontigscaffold1179:185235..185465 -
Gbar_D01chromosomeGbar_D01:17323289..17323519 +
Gbar_A01chromosomeGbar_A01:21105454..21105669 +
D01chromosomeD01:17054085..17054315 +
A01chromosomeA01:20933594..20933809 +
CM017623.1chromosomeCM017623.1:17044051..17044269 +
CM017610.1chromosomeCM017610.1:22474165..22474380 +
CM017649.1chromosomeCM017649.1:17833370..17833600 +
CM017636.1chromosomeCM017636.1:21631640..21631861 +
CM017701.1chromosomeCM017701.1:17094802..17095038 +
CM017688.1chromosomeCM017688.1:21112462..21112677 +
D01chromosomeD01:17474928..17475158 +
A01chromosomeA01:22061208..22061422 +
Chr01chromosomeChr01:22115126..22115341 +
Chr01chromosomeChr01:23508509..23508724 +
Chr01chromosomeChr01:15934760..15934974 +
B_01chromosomeB_01:22975209..22975424 +
Chr02chromosomeChr02:16919398..16919625 +
chr02chromosomechr02:14772749..14772944 +
Chr02_5127485chromosomeChr02_5127485:5243..5436 +
Chr02chromosomeChr02:16695901..16696117 +
Chr02chromosomeChr02:15581775..15581990 +
Chr02_6356261chromosomeChr02_6356261:3137..3346 -
E01chromosomeE01:25043689..25043898 +
F01chromosomeF01:19168085..19168289 +
Chr01chromosomeChr01:159041007..159041225 -
Chr02chromosomeDPL0425:1..550 .
Chr02:17842370..17842899 +
Chr2chromosomeDPL0425:1..550 .
Chr2:31446998..31447527 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394995GQ394995Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-35 x Yumian-1, RIL (2015)AD_ch01_At.01N/A124.8DPL0425View
2CCRI-36 x G2005, RIL (2016)AD_ch15_Dt.01N/A134.21DPL0425View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch01_At.01N/A25.62DPL0425View
Sequence
>DPL0425 ID=DPL0425; Name=DPL0425; organism=Gossypium hirsutum; type=genetic_marker; length=234bp
CAAGAAAGTCAGCAGAGCCATAATAAATAATAATACAAGTGTAGATTCAG
CTCTTTCTCTTTTCTTATAACTTTTGTGGGCAAATGGGGTGGGATCTGAG
AGCGGTAATAAGGAGGAAAATTGAGGAGGGTGGGAGTGGGGTCGCTGCAT
ATTTATTGCATTAATGTTATTATTATTATTATTATTATTATTATTATTAT
TATATAACTCTCTCCTTTATCTGTGTACAAGTGC