DPL0641, DPL0641 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0641
Genbank IDGQ395098
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395098
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0641_F: CTTCATCGCTTTGATACTCATCAC
Primer 2DPL0641_R: CAGTTTCTTCAAAGGACGAGAGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395098
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2261supercontigscaffold_2261:3985..4126 +
D05chromosomeD05:2738835..2738967 -
A05chromosomeA05:2948525..2948666 -
CM018219.1chromosomeCM018219.1:2532077..2532209 -
CM018206.1chromosomeCM018206.1:2925658..2925808 -
KI_05chromosomeKI_05:2144226..2144376 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:2805465..2805609 -
D10_05chromosomeD10_05:58097329..58097461 +
CM016626.1chromosomeCM016626.1:4069737..4069881 -
scaffold1935.1supercontigscaffold1935.1:299430..299571 +
Dt_chr9chromosomeDt_chr9:66815248..66815380 +
D05chromosomeD05:2574289..2574421 -
A05chromosomeA05:2369806..2369947 -
Ghir_D05chromosomeGhir_D05:2714063..2714195 -
Ghir_A05chromosomeGhir_A05:2941511..2941652 -
D05chromosomeD05:2526360..2526492 -
A05chromosomeA05:2852658..2852799 -
D05chromosomeD05:2623800..2623932 -
A05chromosomeA05:2923436..2923577 -
D05chromosomeD05:2637725..2637860 -
A05chromosomeA05:3083138..3083279 -
scaffold8436supercontigscaffold8436:294259..294391 +
scaffold24359supercontigscaffold24359:4254..4401 +
Scaffold3746supercontigScaffold3746:88336..88483 -
Gbar_D05chromosomeGbar_D05:2574880..2575012 -
D05chromosomeD05:2744678..2744810 -
A05chromosomeA05:3034292..3034439 -
CM017627.1chromosomeCM017627.1:2591351..2591489 -
CM017614.1chromosomeCM017614.1:2917776..2917905 -
CM017653.1chromosomeCM017653.1:2753896..2754019 -
CM017640.1chromosomeCM017640.1:2970023..2970164 -
CM017705.1chromosomeCM017705.1:2578452..2578584 -
CM017692.1chromosomeCM017692.1:2868400..2868544 -
D05chromosomeD05:2648238..2648370 -
A05chromosomeA05:3024214..3024355 -
Chr05chromosomeChr05:3025087..3025225 -
Chr05chromosomeChr05:2661853..2661997 -
B_05chromosomeB_05:83240372..83240498 +
Chr09chromosomeChr09:2522357..2522483 -
chr09chromosomechr09:2339855..2339978 -
Chr_09chromosomeChr_09:2639571..2639844 -
Chr09chromosomeChr09:2558419..2558548 -
Chr09chromosomeChr09:2356598..2356894 -
Chr09chromosomeChr09:1856963..1857089 -
Chr09chromosomeChr09:2339035..2339167 -
E05chromosomeE05:3130308..3130437 -
F05chromosomeF05:2470633..2470768 -
Chr13chromosomeChr13:196011115..196011258 +
Chr09chromosomeDPL0641:1..717 .
Chr09:2352756..2353455 -
Chr9chromosomeDPL0641:1..717 .
Chr9:4279635..4280334 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395098GQ395098Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch19_Dt.05N/A65.7DPL0641View
2TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A186.1DPL0641View
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch05_At.05N/A21.5DPL0641View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A15.4DPL0641View
5Monsanto SSR Bin Map, (2009)AD_ch05_At.05N/A181DPL0641View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch19_Dt.05N/A8.4MON_DPL0641View
7W10 x TM-1, F2:3 (2015)AD_ch19_Dt.05N/A101.6MON-DPL0641View
8TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A186.1DPL0641View
9TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A192.3dPL0641-150View
Sequence
>DPL0641 ID=DPL0641; Name=DPL0641; organism=Gossypium hirsutum; type=genetic_marker; length=145bp
CTTCATCGCTTTGATACTCATCACTTGCATTGCTCTTTCGGCGGCCTTCG
CTTTTGCTTTCCTCTTTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTGCAGAGAACAAATTCTCTCGTCCTTTGAAGAAACTG