DPL0365, DPL0365 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0365
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0365_orig
Source Typegenomic
Repeat Motif(TGC)6
PCR ConditionAnnealing temperature: 55
Primer 1DPL0365_F: GAATCTCGCATCTGCATTGAA
Primer 2DPL0365_R: GCACGTTTACTTATGGAATTCTCC
PolymorphismP_ DPL0365
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:65532150..65532393 -
CM018220.1chromosomeCM018220.1:60378145..60378385 -
D5_06chromosomeD5_06:58536263..58536503 -
KI_06chromosomeKI_06:51693381..51693610 +
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:128750970..128751198 -
D10_06chromosomeD10_06:2430878..2431133 +
D10_06chromosomeD10_06:2427998..2428238 +
CM016619.1chromosomeCM016619.1:3383827..3384068 +
CM016619.1chromosomeCM016619.1:3448689..3448929 +
D06chromosomeD06:61465342..61465585 -
Ghir_D06chromosomeGhir_D06:64189045..64189288 -
D06chromosomeD06:62913292..62913535 -
D06chromosomeD06:63556720..63556963 -
D06chromosomeD06:60643067..60643310 -
Dt06chromosomeDt06:63686053..63686293 -
scaffold14999supercontigscaffold14999:28392..28632 -
Gbar_D06chromosomeGbar_D06:60594377..60594617 -
D06chromosomeD06:60432382..60432622 -
CM017628.1chromosomeCM017628.1:60801599..60801842 -
CM017654.1chromosomeCM017654.1:64343158..64343398 -
CM017706.1chromosomeCM017706.1:60970351..60970591 -
D06chromosomeD06:64023801..64024044 -
Chr06chromosomeChr06:126284180..126284408 -
Chr06chromosomeChr06:128464962..128465190 -
Chr06chromosomeChr06:58180010..58180250 -
B_06chromosomeB_06:1873504..1873733 -
Chr10chromosomeChr10:60755646..60755898 -
chr10chromosomechr10:46673918..46674491 -
Chr_10chromosomeChr_10:41571126..41571375 -
Chr10chromosomeChr10:39692784..39693015 -
Chr10chromosomeChr10:34033154..34033394 -
Chr10chromosomeChr10:41219927..41220182 -
Chr10chromosomeChr10:41217702..41217943 -
Chr06chromosomeChr06:3278494..3278734 +
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0365_origDPL0365_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch25_Dt.06N/A31.65DPL0365View
2AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A202DPL0365View
3TM-1 x 3-79, RIL (2012)AD_ch25_Dt.06N/A18DPL0365View
4TM-1 x 3-79, RIL (2014)AD_ch25_Dt.06N/A16.1DPL0365View
5(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.06N/A99.8DPL0365View
6TM-1 x 3-79, RIL (2012.v3)AD_ch25_Dt.06N/A16.11DPL0365View
Sequence
>DPL0365 ID=DPL0365; Name=DPL0365; organism=Gossypium hirsutum; type=genetic_marker; length=244bp
GAATCTCGCATCTGCATTGAAATTGCAGGTATATTAACTAATAATGGAGA
AGCTGTTGCTGCTGCTGCTGCTGCTGTGACTATTCAGAATCAATCAGCCT
CTGAAAATATGCTTGCTGATGGTGCGGTGCTGAATGGGTGGACTTGTTTG
TGAGGGAGATGATGAGTGCTACAAGTGTGGATGATGCCAAATCCCATGCC
TCTAAATTGCTTGCAGTTTTGGAGAATTCCATAAGTAAACGTGC